Bioconductor Isoform

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isoformswitchanalyzer isoform differential isoform usage

written 5.4 years ago by A ▴ 40

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1.1k

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gene isoform quantification rna-seq

updated 4.7 years ago by swbarnes2 ★ 1.3k • written 4.7 years ago by angel.campos • 0

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1.2k

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cancer Isoform limma IsoformSwitchAnalyzeR

updated 4.5 years ago by k.vitting.seerup ▴ 120 • written 4.5 years ago by asmita • 0

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1.3k

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isoform RNA-seq hisat2 stringtie ballgown

3.6 years ago ra711 • 0

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2.2k

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RNASeqData isoform DESeq2

2.0 years ago • updated 23 months ago priyanka.m • 0

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368

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Isoform IsoformSwitchAnalyzeR

11 months ago Craig • 0

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945

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kallisto differential isoform usage isoform

6.5 years ago ilyco • 0

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564

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pacbio isoform

written 16 months ago by lhaiyan3 • 0

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1.0k

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tximport isoform voom

updated 3.8 years ago by Gordon Smyth 50k • written 3.8 years ago by Ina Hoeschele ▴ 620

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1.3k

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isoform deep sequencing voom

updated 3.7 years ago by Gordon Smyth 50k • written 3.7 years ago by Ina Hoeschele ▴ 620

10 results • Page 1 of 1

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Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…

Answer: Reproducibility issue with scran together with lapply and BiocParallel by Aaron Lun ★ 28k

IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…

Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0

I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…

Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge by shuwangxinze1996 • 0

Hello, I used 48 cpus and 320G of memory to run this program. My bam files size are 7-9G, wonder how much CPU and memory is enough? Thank …

Votes

A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?

A: How to explain how DESeq2 works to someone with zero bioinformatics background?

Answer: Interpret plot from DiffBind

Answer: How to retrieve gene ontology GO class from gene list?

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Supporter to JKim • 0