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Isoforms
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2
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Confounding DE results with DESeq2
isoforms
DESeq2
2.0 years ago
arfranco
▴ 130
1
vote
9
replies
1.8k
views
Difference between gene-level test and transcript-level test with RATs (Relative Abundance of Transcrits)
RATs
RNA-Seq
Isoforms
DTU
expression
updated 4.7 years ago by
fruce_ki
▴ 20 • written 4.7 years ago by
UserAnonyme
• 0
0
votes
3
replies
1.3k
views
Downstream analysis for Salmon output: IsoformSwitchAnalyzeR or TSIS?
isoforms
diffrential expression
noncoding rna
TSIS
isoformswitchanalyzeR
5.9 years ago
rbenel
▴ 40
0
votes
0
replies
938
views
Metadata sheet for DEXSeq analysis
dexseq
differential isoform usage
isoforms
summarizeoverlaps
granges
6.0 years ago
A
▴ 40
0
votes
0
replies
1.4k
views
cummeRbund heatmap for specific isoforms (not genes)
cummerbund
heatmap
isoforms
transcript_id
7.0 years ago
domenico.somma
• 0
5
votes
18
replies
3.1k
views
Incongruencies between DEXSeq and BitSeq/Cuffdiff
dexseq
bitseq
cuffdiff
Differential exon usage
isoforms
8.8 years ago
elle
▴ 10
5
votes
3
replies
2.4k
views
edgeR: annotation and isoform analysis alternatives
edgeR
ruvseq
rnaseq
isoforms
8.9 years ago • updated 8.8 years ago
sergio.espeso-gil
• 0
1
vote
2
replies
1.4k
views
DEXSeq transcripts per condition
DEXSeq
transcripts
isoforms
updated 8.9 years ago by
Alejandro Reyes
★ 1.9k • written 8.9 years ago by
peter_venhuizen
• 0
8 results • Page
1 of 1
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Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
by
Michael Love
41k
Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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