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JunctionSeq
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2
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2
replies
1.1k
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Question: Error when running QoRTs for JunctionSeq
DEXSeq
JunctionSeq
RNAseq
QoRTs
3.2 years ago • updated 3.1 years ago
n.tear
▴ 20
0
votes
1
reply
1.4k
views
JunctionSeq/DEXSeq: Dispersion plot looks strange (but is fine in DESeq2)
deseq2
junctionseq
dexseq
estimatedispersions
rnaseq
updated 7.3 years ago by
Steve Lianoglou
★ 13k • written 7.3 years ago by
l.frank
• 0
0
votes
1
reply
828
views
JunctionSeq Can't produce Summary Plots
JunctionSeq
7.0 years ago
rachelrodgers12
• 0
0
votes
1
reply
812
views
JunctionSeq producing strangely large effect sizes for certain exon counting bins
junctionseq
splicing
RNAseq
DEXSeq
4.4 years ago
stuart
▴ 10
0
votes
0
replies
818
views
Setting relevel with the JunctionSeq package
junctionseq
relevel
reference
7.2 years ago
Assa Yeroslaviz
★ 1.5k
0
votes
0
replies
836
views
JunctionSeq pairwise contrast with a multi-level treatment
junctionseq
design and contrast matrix
7.5 years ago
stuart
• 0
1
vote
0
replies
932
views
JunctionSeq on multiple conditions
junctionseq
qorts
multiple factor design
relevel
7.2 years ago
Assa Yeroslaviz
★ 1.5k
0
votes
0
replies
823
views
Problems running JunctionSeq
junctionseq
7.4 years ago
jbono
▴ 10
8 results • Page
1 of 1
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Replies
Answer: OrgDb for maize
by
Guido Hooiveld
★ 3.9k
I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …
Comment: Theoretical WGCNA Question
by
Garrett
• 0
Thanks Peter!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
sropri
• 0
Thank you!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
alserg
▴ 240
They are reorder in the decreasing order.
Comment: significant difference of p-values with dream() after updating VariancePartition
by
Le
• 0
Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…
Votes
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos
Awards
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Peter Hickey
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sropri
• 0
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W. Evan Johnson
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Alejandro Reyes
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shepherl
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