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JunctionSeq
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2
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1.1k
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Question: Error when running QoRTs for JunctionSeq
DEXSeq
JunctionSeq
RNAseq
QoRTs
3.1 years ago • updated 3.0 years ago
n.tear
▴ 20
0
votes
1
reply
799
views
JunctionSeq producing strangely large effect sizes for certain exon counting bins
junctionseq
splicing
RNAseq
DEXSeq
4.3 years ago
stuart
▴ 10
0
votes
1
reply
814
views
JunctionSeq Can't produce Summary Plots
JunctionSeq
6.9 years ago
rachelrodgers12
• 0
0
votes
0
replies
807
views
Setting relevel with the JunctionSeq package
junctionseq
relevel
reference
7.1 years ago
Assa Yeroslaviz
★ 1.5k
1
vote
0
replies
917
views
JunctionSeq on multiple conditions
junctionseq
qorts
multiple factor design
relevel
7.1 years ago
Assa Yeroslaviz
★ 1.5k
0
votes
1
reply
1.3k
views
JunctionSeq/DEXSeq: Dispersion plot looks strange (but is fine in DESeq2)
deseq2
junctionseq
dexseq
estimatedispersions
rnaseq
updated 7.3 years ago by
Steve Lianoglou
★ 13k • written 7.3 years ago by
l.frank
• 0
0
votes
0
replies
814
views
Problems running JunctionSeq
junctionseq
7.4 years ago
jbono
▴ 10
0
votes
0
replies
819
views
JunctionSeq pairwise contrast with a multi-level treatment
junctionseq
design and contrast matrix
7.4 years ago
stuart
• 0
8 results • Page
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Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
by
Michael Love
41k
Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Votes
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
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