Bioconductor KEGG

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216

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clusterProfiler KEGG

5 weeks ago Jessica • 0

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549

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Salmo_salar RNASeq KEGG pathview

7 weeks ago • updated 5 weeks ago ingrid.h • 0

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515

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pathview Pathways KEGG

3 months ago Philippine • 0

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466

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metaboliteIDmapping Metabolomics KEGG

updated 6 months ago by deeenes ▴ 60 • written 6 months ago by vipinsapla • 0

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385

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kegg.gsets gageData gage KEGG

8 months ago cereyredondo • 0

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876

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KEGGgraph KEGG

updated 10 months ago by Guido Hooiveld ★ 4.1k • written 10 months ago by Fara • 0

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323

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GO KEGG gage pathview

10 months ago danalvoronov ▴ 10

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464

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KEGGgraph org.Cs.eg.db clusterProfiler KEGG AnnotationHubSoftware

updated 11 months ago by James W. MacDonald 68k • written 11 months ago by fernanda.backsouza ▴ 30

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2.9k

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clusterProfiler GenomicDistributionsData KEGG

11 months ago fernanda.backsouza ▴ 30

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647

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KEGGREST GenomicDistributionsData KEGGgraph KEGG

updated 11 months ago by Guido Hooiveld ★ 4.1k • written 11 months ago by fernanda.backsouza ▴ 30

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1.5k

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Pathways clusterProfiler gseKEGG KEGG

written 11 months ago by julia_mcdonough • 0

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3.0k

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pathview kegg KEGG

updated 5 months ago by Evan • 0 • written 18 months ago by Mauricio Diego • 0

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2.6k

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pathview KEGG

written 3.8 years ago by curiousmind007 ▴ 10

13 results • Page 1 of 1

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Comment: DiffBind custom normalization factor by Abbie • 0

Hello! Thanks so much for adding dba.normalize and all the documentation in the manual! I'm hoping I can ask a follow-up question here. I…

Answer: CpGs with genomic positions greater than the chromosome size in EPICv2? by James W. MacDonald 68k

All of the annotation packages provided by Bioconductor are simply repackaging of existing data from one or more sources. In this case, the…

Comment: Using TPM from tximport of Salmon output for singscore by Kent • 0

Thank you for the suggestions Michael. Would you say that after filtering out the low count genes, `rlog(counts, blind = T)` is doing the s…

Comment: Using TPM from tximport of Salmon output for singscore by Michael Love 43k

For clustering generally we recommend `vst()` see the workflow for example. For working with individual samples, I can see how a scaling/t…

Comment: DESeq2 model - How to test case/control time course model when taking account wi by Michael Love 43k

I'd recommend working with a local statistician or someone familiar with linear models in R. I have to reserve my time on the support site …

Votes

clusterProfiler-GO enrichment Error

A: Machine learning in R book

Data preparation and Machine learning on time course RNAseq data

Answer: Use of org.Rn.eg.db with GRCr8 reference genome

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