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Recent ...
Replies
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
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Seyram M.
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Dear Michael, I tried all three ways (the orIginal, increasing the number of required samples,and subsetting (the countdata and metadata be…
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Michael Love
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The red line does assume that shape but the fact the black points show that pattern is discussed in the 2014 paper.
> Some caution is warr…
Comment: Error for AnnotationForge makeOrgPackageFromNCBI function
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James W. MacDonald
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I don't really follow what you are saying. All you have to do is delete the NCBI.sqlite db and *re-run the script exactly as you did above.…
Comment: Methylation Analysis experiment design using Limma
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Thank you very much for your reply and your suggestion, as I'm having a bit of trouble finding information on how to manage this part of th…
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Hello,
I'm trying to do a differential methylation analysis with the Limma package and was wondering if you had any suggestions on how to …
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