Bioconductor KEGGgraph

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KEGGREST GenomicDistributionsData KEGGgraph KEGG

updated 4 months ago by Guido Hooiveld ★ 4.1k • written 5 months ago by fernanda.backsouza ▴ 20

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416

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enrichKEGG KEGGgraph KEGG

updated 7 months ago by Guido Hooiveld ★ 4.1k • written 7 months ago by cinzia.spagnoli • 0

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415

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KEGGgraph KEGG

updated 3 months ago by Guido Hooiveld ★ 4.1k • written 3 months ago by Fara • 0

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291

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KEGGgraph org.Cs.eg.db clusterProfiler KEGG AnnotationHubSoftware

updated 4 months ago by James W. MacDonald 67k • written 4 months ago by fernanda.backsouza ▴ 20

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116

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igraph KEGGgraph RCy3 GraphNEL

updated 5 days ago by alex.pico ▴ 20 • written 5 days ago by Arindam ▴ 80

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Answer: Trying to convert ATACseq annotations of non-model species into human orthologs, by James W. MacDonald 67k

I would use the mapper I note above, and build your own `OrgDb`, then do the GO analysis directly. ``` > library(AnnotationForge) > option…

Comment: Trying to convert ATACseq annotations of non-model species into human orthologs, by James W. MacDonald 67k

There's already an `OrgDb` for this species on the AnnotationHub that hypothetically would be ideal, but there are almost no GO mappings, s…

Answer: Trying to convert ATACseq annotations of non-model species into human orthologs, by James W. MacDonald 67k

It's probably not going to work that well using that species, but you can give it a shot. Note that you don't appear to have any good IDs. …

Comment: Trying to convert ATACseq annotations of non-model species into human orthologs, by Guido Hooiveld ★ 4.1k

Not an answer to your question, but it seems the content of the column `Entrez ID` are actually no *entrez ids* but rather *aliases*... Ent…

Answer: ChIPpeakAnno can not load data by hukai916 ▴ 10

`ChIPpeakAnno` stores several example files under its `extdata` directory for demonstration purposes. These files can be found with the `sy…

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