Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
KEGGgraph
•
reset
0
votes
5
replies
2.8k
views
retrieve human readable gene names from KEGG identifiers
kegggraph
8.2 years ago
Osvaldo
▴ 40
0
votes
7
replies
3.1k
views
Visualise KEGG pathway and highlight genes
Cancer
KEGGgraph
Cancer
KEGGgraph
updated 15.0 years ago by
Paolo Sonego
▴ 140 • written 15.0 years ago by
Daniel Brewer
★ 1.9k
2
votes
11
replies
4.4k
views
Recent build and parsing error in pathview
pathview
KEGGgraph
gage
pathway
pathway analysis
6.7 years ago
Luo Weijun
★ 1.6k
4
votes
6
replies
3.5k
views
Pathview unable to download pathways
clusterProfiler
KEGGgraph
clusterpr
KEGG
pathview
updated 19 months ago by
Guido Hooiveld
★ 3.9k • written 21 months ago by
rama
▴ 10
0
votes
6
replies
3.2k
views
KEGGgraph warning: "In structure(x$children, class = "XMLNodeList") :"
kegggraph
6.8 years ago
AR3513
• 0
0
votes
4
replies
1.6k
views
KEGGgraph fails on a KEGG XML file
KEGGgraph
KEGGgraph
updated 14.1 years ago by
Jitao David Zhang
▴ 340 • written 14.1 years ago by
Rajarshi Guha
▴ 120
0
votes
4
replies
1.8k
views
KEGGgraph
Pathways
Organism
graph
PROcess
KEGGgraph
Pathways
Organism
graph
PROcess
KEGGgraph
11.4 years ago
Ricardo Silva
▴ 110
1
vote
5
replies
1.9k
views
About the state of KEGG-related packages
KEGGSOAP
KEGGgraph
keggorthology
clusterProfiler
KEGGprofile
PathNet
KEGGSOAP
KEGGgraph
updated 10.7 years ago by
Luo Weijun
★ 1.6k • written 10.7 years ago by
enricoferrero
▴ 660
0
votes
7
replies
2.1k
views
Using KeggGraph's KEGGpathway2reactionGraph and mergeKEGGgraphs functions
graph
KEGGgraph
graph
KEGGgraph
10.5 years ago
Zhang, Jitao David
▴ 120
0
votes
2
replies
1.5k
views
KEGGgraph, error
Organism
hgu133a
KEGGgraph
Organism
hgu133a
KEGGgraph
updated 15.0 years ago by
Jitao Zhang
▴ 20 • written 15.0 years ago by
Markus Schmidberger
▴ 380
0
votes
4
replies
1.4k
views
KEGGGraph: some complexed proteins are orphans in graphNEL
KEGGgraph
KEGGgraph
updated 14.9 years ago by
Jitao David Zhang
▴ 340 • written 14.9 years ago by
Paul Shannon
★ 1.1k
0
votes
2
replies
951
views
incorrect direction in compound-gene interactions
kegggraph
6.7 years ago
AR3513
• 0
0
votes
3
replies
1.9k
views
KEGGgraph: gene ids for nodes in a pathway
KEGGgraph
KEGGgraph
updated 14.9 years ago by
Jitao David Zhang
▴ 340 • written 14.9 years ago by
Tim Smith
★ 1.1k
2
votes
3
replies
3.3k
views
How to convert graphNEL object into Adjacency Matrix?
graph
kegggraph
xml
updated 6.9 years ago by
Robert Castelo
★ 3.1k • written 6.9 years ago by
urwaCFC
• 0
0
votes
2
replies
1.8k
views
KEGGgraph problem
KEGGgraph
KEGGgraph
updated 11.2 years ago by
Zhang, Jitao David
▴ 120 • written 11.2 years ago by
Guest User
★ 13k
0
votes
3
replies
1.8k
views
Fwd: KEGGgraph / Rgraphviz dot layout
KEGGgraph
KEGGgraph
updated 13.3 years ago by
Jitao David Zhang
▴ 340 • written 13.3 years ago by
Unger, Kristian
▴ 40
0
votes
1
reply
1.1k
views
KEGGgraph question
Pathways
KEGGgraph
Pathways
KEGGgraph
15.1 years ago • updated 15.0 years ago
Sim, Fraser
▴ 350
0
votes
1
reply
1.1k
views
KEGGgraph package: KGML files working again
KEGGgraph
KEGGgraph
updated 14.9 years ago by
Markus Schmidberger
▴ 380 • written 14.9 years ago by
Jitao David Zhang
▴ 340
0
votes
3
replies
1.6k
views
Problem with KEGGgraph
Organism
hgu133plus2
KEGGgraph
Organism
hgu133plus2
KEGGgraph
updated 14.5 years ago by
Tony Chiang
▴ 570 • written 14.5 years ago by
Fraser Sim
▴ 270
0
votes
1
reply
1.4k
views
KEGGgraph bug
Organism
KEGGgraph
Organism
KEGGgraph
updated 14.4 years ago by
Jitao David Zhang
▴ 340 • written 14.4 years ago by
Fraser Sim
▴ 270
0
votes
1
reply
968
views
KEGGgraph query
Pathways
graph
KEGGgraph
Pathways
graph
KEGGgraph
updated 14.3 years ago by
Jitao David Zhang
▴ 340 • written 14.3 years ago by
anupam sinha
▴ 270
0
votes
2
replies
1.5k
views
KEGGgraph: any way to obtain 'outcome' nodes?
Pathways
KEGGgraph
Pathways
KEGGgraph
updated 14.3 years ago by
Fraser Sim
▴ 270 • written 14.3 years ago by
Paul Shannon
★ 1.1k
0
votes
1
reply
1.5k
views
KEGGgraph bug
Pathways
Organism
SIM
KEGGgraph
Pathways
Organism
SIM
KEGGgraph
updated 14.3 years ago by
Marc Carlson
★ 7.2k • written 14.3 years ago by
Fraser Sim
▴ 270
0
votes
1
reply
1.8k
views
KEGGgraph: retrieveKGML error (due to wrong ftp path)
KEGGgraph
KEGGgraph
updated 14.0 years ago by
Cristobal Fresno Rodríguez
▴ 370 • written 14.0 years ago by
Ludwig Geistlinger
▴ 70
0
votes
2
replies
1.6k
views
makeAttr() missing in KEGGgraph
KEGGgraph
KEGGgraph
updated 13.9 years ago by
Martin Morgan
25k • written 13.8 years ago by
Groot, Philip de
▴ 630
0
votes
1
reply
1.1k
views
error in plotKEGGGraph
Pathways
KEGGgraph
Pathways
KEGGgraph
updated 13.7 years ago by
Jitao David Zhang
▴ 340 • written 13.7 years ago by
Robert M. Flight
▴ 280
0
votes
3
replies
1.4k
views
error in plotKEGGGraph
Pathways
KEGGgraph
Pathways
KEGGgraph
updated 13.5 years ago by
Pierre Neuvial
▴ 30 • written 13.5 years ago by
Jitao David Zhang
▴ 340
0
votes
1
reply
1.2k
views
About KEGGgraph supplementary information
Rgraphviz
KEGGgraph
Rgraphviz
KEGGgraph
updated 13.4 years ago by
Uzun, Alper
▴ 10 • written 13.4 years ago by
Jitao Zhang
▴ 20
0
votes
2
replies
1.3k
views
(no subject)
KEGGgraph
KEGGgraph
updated 13.3 years ago by
Jitao David Zhang
▴ 340 • written 13.3 years ago by
Yan Jiao
▴ 140
0
votes
2
replies
1.3k
views
KEGGgraph
graph
KEGGgraph
graph
KEGGgraph
updated 12.7 years ago by
Jitao David Zhang
▴ 340 • written 12.7 years ago by
Jing Huang
▴ 380
0
votes
1
reply
885
views
objNameToList() on some particular list of objects in parent frame
tkWidgets
xml
kegggraph
updated 6.9 years ago by
James W. MacDonald
65k • written 6.9 years ago by
urwaCFC
• 0
1
vote
2
replies
1.1k
views
possible bug in parseKGML?
kegggraph
6.6 years ago
Martin Pirkl
• 0
1
vote
2
replies
1.0k
views
cannot find function even though KEGGgraph package supposedly installed
kegggraph
biocinstaller
updated 5.7 years ago by
Mike Smith
★ 6.5k • written 5.7 years ago by
kathleenfix
▴ 10
2
votes
2
replies
205
views
Error in enrichKEGG for a model organism
enrichKEGG
KEGGgraph
KEGG
updated 5 weeks ago by
Guido Hooiveld
★ 3.9k • written 5 weeks ago by
cinzia.spagnoli
• 0
0
votes
1
reply
478
views
KEGGgraph parseKGML2Graph function
KEGGgraph
updated 16 months ago by
James W. MacDonald
65k • written 16 months ago by
Cathy
• 0
0
votes
1
reply
752
views
Pathview error Warning: Parsing ./mmu04928.xml file failed, please check the file!
KEGGgraph
pathview
updated 21 months ago by
Guido Hooiveld
★ 3.9k • written 21 months ago by
k.jane.olczak
• 0
4
votes
2
replies
1.7k
views
Is there any description available for KEGG Pathway Edge Types
KEGG
SystemsBiology
KEGGgraph
ontology
17 months ago
Wuschel
▴ 10
1
vote
2
replies
1.9k
views
How to get the latest KEGG pathway
KEGG
kegg.db
kegggraph
6.1 years ago
Raymond
▴ 20
0
votes
3
replies
908
views
ROntoTools: Set returned by keggPathwayGraphs is missing 121 pathways reported by keggPathwayNames
KEGGREST
ROntoTools
KEGG
KEGGgraph
20 months ago
abf
▴ 30
0
votes
0
replies
1.0k
views
looking for tools to study additive expression effects in gene pathways/networks
Pathways
Rgraphviz
KEGGgraph
Pathways
Rgraphviz
KEGGgraph
10.9 years ago
Christopher T Gregg
▴ 210
0
votes
0
replies
1.1k
views
error in plotKEGGGraph
Pathways
GLAD
KEGGgraph
Pathways
GLAD
KEGGgraph
13.5 years ago
Robert M. Flight
▴ 280
0
votes
0
replies
252
views
Gene names not included on KEGGgraph plots
KEGGgraph
9 months ago
hilarius_bookbinder
• 0
0
votes
0
replies
1.3k
views
Bioconductor Digest, Vol 93, Issue 26: How to create KEGG's pathway data for SPIA?
Organism
KEGGgraph
SPIA
Organism
KEGGgraph
SPIA
13.3 years ago
Tarca, Adi
▴ 570
0
votes
0
replies
1.1k
views
KEGGgraph and Rgraphviz for win 64
KEGGgraph
KEGGgraph
13.3 years ago
Yan Jiao
▴ 140
0
votes
0
replies
816
views
Important KEGGgraph update (parse issue solved)
KEGGgraph
KEGGgraph
14.8 years ago
Jitao David Zhang
▴ 340
0
votes
0
replies
844
views
KEGGgraph ??
Pathways
GO
GOstats
keggorth
KEGGgraph
Pathways
GO
GOstats
keggorth
KEGGgraph
15.5 years ago
Paul Evans
▴ 180
46 results • Page
1 of 1
Recent ...
Replies
Answer: Doing comparison of RNA-seq data using EdgeR
by
Gordon Smyth
50k
It's pretty easy to do a two-group comparison using edgeR, but you seem to be stuck at the initial stage of reading data into R. If you exp…
Answer: Differing results from plotMDS and PCAtools
by
Gordon Smyth
50k
The reason why the two plots are different is that the first plot is a PCA plot while the second is a biplot. Quite different plots. The P…
Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
by
Michael Love
41k
Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Awards
• All
Popular Question
to
Dario Strbenac
★ 1.5k
Popular Question
to
Ankit
▴ 20
Popular Question
to
michael.s
• 0
Popular Question
to
James W. MacDonald
65k
Popular Question
to
Pierre Lindenbaum
▴ 10
Locations
• All
Melbourne, Australia,
5 minutes ago
WEHI, Melbourne, Australia,
8 minutes ago
Toulouse, France,
15 minutes ago
France,
17 minutes ago
Australia,
22 minutes ago
Traffic: 756 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6