Bioconductor KEGGgraph

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249

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igraph KEGGgraph RCy3 GraphNEL

updated 25 days ago by alex.pico ▴ 20 • written 25 days ago by Arindam ▴ 80

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461

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KEGGgraph KEGG

updated 4 months ago by Guido Hooiveld ★ 4.1k • written 4 months ago by Fara • 0

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313

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KEGGgraph org.Cs.eg.db clusterProfiler KEGG AnnotationHubSoftware

updated 5 months ago by James W. MacDonald 67k • written 5 months ago by fernanda.backsouza ▴ 20

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451

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KEGGREST GenomicDistributionsData KEGGgraph KEGG

updated 5 months ago by Guido Hooiveld ★ 4.1k • written 5 months ago by fernanda.backsouza ▴ 20

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438

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enrichKEGG KEGGgraph KEGG

updated 7 months ago by Guido Hooiveld ★ 4.1k • written 7 months ago by cinzia.spagnoli • 0

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Comment: dmpFinder for other objects by neyousha • 0

Hi James, Thank you a lot for responding. Hmm... so do you think if have matrix average_beta below: ![average_beta_matrix][1] [1]:…

Comment: DEseq2 time-series design by Michael Love 42k

Would you mind making a new post -- it's just easier for threaded content. And feel free to post any particular code or images you need.

Comment: Rsubread alignment crashes at 35%, valgrind indicates invalid writes by Yang Liao ▴ 440

Thanks for taking the time to report the bug! The provided `Valgrind` report is very helpful and suggests the issue lies within the banded …

Comment: Rsubread - Error on buildindex - big ref sequence by mdejesus • 0

Hi just checking if this limit still exists, and/or if there are plans to lift it? subread is our preferred tool kit, but we have some CRIS…

Answer: dmpFinder for other objects by James W. MacDonald 67k

The help page is helpful for answering your question: ``` Usage: dmpFinder(dat, pheno, type = c("categorical", "continuous"), …

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Answer: dmpFinder for other objects

GSVA ssGSEA vs. Broad implementation of ssGSEA

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