updated 6.5 years ago by
Luo Weijun
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1.5k
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written 6.5 years ago by
svlachavas
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780
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Answer: ashr vs apeglm for interaction data
by
Michael Love
36k
Can you show the MA plot for these two analyses?
Also for a gene with a large LFC from ashr, can you show plotCounts?
Comment: Robust Multi-array Average could get negative value or not?
by
Yang Shi
•
0
Got the point sir~ Thanks so much!
Comment: Robust Multi-array Average could get negative value or not?
by
James W. MacDonald
59k
Because it's a small number.
Comment: Robust Multi-array Average could get negative value or not?
by
Yang Shi
•
0
Thanks for your quick reply sir! Could you tell me why 4 which you selected here?
Answer: Robust Multi-array Average could get negative value or not?
by
James W. MacDonald
59k
After running RMA, your data have been logged, base 2. Any value < 1 will have a negative value. Looking at the data from that GEO submissi…
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