Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
KaryoploteR
•
reset
0
votes
0
replies
434
views
Make custom Txdb class objects from Txdb
GenomicFeatures
karyoploteR
TxDb.Hsapiens.UCSC.hg19.knownGene
12 months ago
Shreyash
• 0
9
votes
5
replies
1.4k
views
karyoploteR genome coverage plotting using BSgenome.TAIR10
BSgenome.Athaliana.TAIR.TAIR10.
karyoploteR
BSgenome
updated 19 months ago by
James W. MacDonald
65k • written 19 months ago by
rtt100
• 0
0
votes
1
reply
815
views
KaryoploteR: error using galGal6 genome
KaryoploteR
updated 3.7 years ago by
Kevin Blighe
★ 3.9k • written 3.7 years ago by
mpigozzi
• 0
4
votes
5
replies
2.8k
views
How to add a color legend to plotKaryotype and kpPlotRegions ?
karyoploter
updated 4.6 years ago by
bernatgel
▴ 150 • written 4.6 years ago by
Aditya
▴ 160
0
votes
1
reply
846
views
Bioconductor - Karyoploter | Visualization | Multiple Chromosome display issue
karyoploteR
updated 5.0 years ago by
bernatgel
▴ 150 • written 5.0 years ago by
saeed Ur Rehman
• 0
0
votes
1
reply
1.9k
views
How to name the custom genome in karyoploteR ?
software error
R
bsgenome
karyoploter
updated 6.5 years ago by
bernatgel
▴ 150 • written 6.5 years ago by
kirannbishwa01
▴ 10
1
vote
2
replies
1.2k
views
KaryoploteR does not work on R.3.3.3
karyoploter
updated 6.6 years ago by
bgel
▴ 10 • written 6.6 years ago by
spr
▴ 10
0
votes
0
replies
864
views
karyoploteR: custom genome axis $latest.plot
KaryoploteR
6.8 years ago
Radek
▴ 90
8 results • Page
1 of 1
Recent ...
Replies
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
Alexandre
• 0
Hello James, Thank you for your answer and precise exemple ! It is disappointing but makes sense. Best, Alexandre
Comment: How to retrieve gene ontology GO class from gene list?
by
James W. MacDonald
65k
Yes. The `keys` argument to both `select` and `mapIds` will accept a vector (see `?select` for more information). Also, the [vignette][1] f…
Comment: How to retrieve gene ontology GO class from gene list?
by
bandconductor
• 0
Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
James W. MacDonald
65k
Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
Alexandre
• 0
Hello James, Thank you very much for your answer and taking the time to read my post. I understand your remark, but isn't the approach o…
Votes
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
Awards
• All
Scholar
to
James W. MacDonald
65k
Supporter
to
JKim
• 0
Popular Question
to
Gordon Smyth
50k
Popular Question
to
Chris
• 0
Supporter
to
Jonathan
▴ 10
Locations
• All
United States,
3 minutes ago
United States,
10 minutes ago
France,
17 minutes ago
WEHI, Melbourne, Australia,
21 minutes ago
EMBL Heidelberg,
34 minutes ago
Traffic: 1111 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6