Bioconductor KaryoploteR

Showing : KaryoploteR • reset

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435

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GenomicFeatures karyoploteR TxDb.Hsapiens.UCSC.hg19.knownGene

12 months ago Shreyash • 0

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1.4k

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BSgenome.Athaliana.TAIR.TAIR10. karyoploteR BSgenome

updated 19 months ago by James W. MacDonald 65k • written 19 months ago by rtt100 • 0

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815

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KaryoploteR

updated 3.7 years ago by Kevin Blighe ★ 3.9k • written 3.7 years ago by mpigozzi • 0

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2.8k

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karyoploter

updated 4.6 years ago by bernatgel ▴ 150 • written 4.6 years ago by Aditya ▴ 160

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846

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karyoploteR

updated 5.0 years ago by bernatgel ▴ 150 • written 5.0 years ago by saeed Ur Rehman • 0

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1.9k

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software error R bsgenome karyoploter

updated 6.5 years ago by bernatgel ▴ 150 • written 6.5 years ago by kirannbishwa01 ▴ 10

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1.2k

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karyoploter

updated 6.6 years ago by bgel ▴ 10 • written 6.6 years ago by spr ▴ 10

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864

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KaryoploteR

6.8 years ago Radek ▴ 90

8 results • Page 1 of 1

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Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k

Are you commenting on the OP's question, or adding a different question? If the latter, please start a new post rather than piggybacking on…

Answer: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

Use `bquote`. See section 4.6 in [the vignette][1]. [1]: https://bioconductor.org/packages/release/bioc/vignettes/EnhancedVolcano/in…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by SamGG ▴ 350

I was thinking about removing unwanted variations at the sample level (ie a transformation shared across genes) not at the gene level. Corr…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k

That's an assumption used for normalization of a sample, not an assumption you can use for an individual model. We always normalize to atte…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by SamGG ▴ 350

Is useless the assumption that the majority of genes have no variation in expression (bearing in mind that they are distributed over the en…

Votes

biomaRt error: database disk image is malformed

Comment: biomaRt : No lock file for BiocFileCache

Answer: Cross-species analysis - how to compute the mid parent value?

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0