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KaryoploteR
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Make custom Txdb class objects from Txdb
GenomicFeatures
karyoploteR
TxDb.Hsapiens.UCSC.hg19.knownGene
12 months ago
Shreyash
• 0
9
votes
5
replies
1.4k
views
karyoploteR genome coverage plotting using BSgenome.TAIR10
BSgenome.Athaliana.TAIR.TAIR10.
karyoploteR
BSgenome
updated 19 months ago by
James W. MacDonald
65k • written 19 months ago by
rtt100
• 0
0
votes
1
reply
814
views
KaryoploteR: error using galGal6 genome
KaryoploteR
updated 3.7 years ago by
Kevin Blighe
★ 3.9k • written 3.7 years ago by
mpigozzi
• 0
4
votes
5
replies
2.8k
views
How to add a color legend to plotKaryotype and kpPlotRegions ?
karyoploter
updated 4.6 years ago by
bernatgel
▴ 150 • written 4.6 years ago by
Aditya
▴ 160
0
votes
1
reply
844
views
Bioconductor - Karyoploter | Visualization | Multiple Chromosome display issue
karyoploteR
updated 5.0 years ago by
bernatgel
▴ 150 • written 5.0 years ago by
saeed Ur Rehman
• 0
0
votes
1
reply
1.9k
views
How to name the custom genome in karyoploteR ?
software error
R
bsgenome
karyoploter
updated 6.5 years ago by
bernatgel
▴ 150 • written 6.5 years ago by
kirannbishwa01
▴ 10
1
vote
2
replies
1.2k
views
KaryoploteR does not work on R.3.3.3
karyoploter
updated 6.6 years ago by
bgel
▴ 10 • written 6.6 years ago by
spr
▴ 10
0
votes
0
replies
862
views
karyoploteR: custom genome axis $latest.plot
KaryoploteR
6.8 years ago
Radek
▴ 90
8 results • Page
1 of 1
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Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR)
by
Michael Love
41k
> I got many p values that had "1.000000e+00" and padj "1" and stat of "0" when I added the Log threshold of LFC >1 and LFC < -1...is this …
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴ 10
With all my love, thank you Guido, GOxploreR beeing a big ally for me. I don't know how to be grateful right now.
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.
Answer: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
swbarnes2
★ 1.3k
Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…
Comment: get BM error
by
James W. MacDonald
65k
I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
Votes
Answer: How to retrieve gene ontology GO class from gene list?
Answer: How to retrieve gene ontology GO class from gene list?
C: when to apply quantile normalization with voom in limma/voom framework with RNA-
A: How to know if I should use voomWithQualityWeights() or not?
A: Weird results (ribosomal proteins / Y-linked genes) in limma/voom
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