Bioconductor KaryoploteR

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karyoploter

updated 4.1 years ago by bernatgel ▴ 150 • written 4.1 years ago by Aditya ▴ 160

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1.7k

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software error R bsgenome karyoploter

updated 5.9 years ago by bernatgel ▴ 150 • written 5.9 years ago by kirannbishwa01 • 0

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988

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karyoploter

updated 6.0 years ago by bgel ▴ 10 • written 6.0 years ago by spr ▴ 10

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904

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BSgenome.Athaliana.TAIR.TAIR10. karyoploteR BSgenome

updated 12 months ago by James W. MacDonald 63k • written 12 months ago by rtt100 • 0

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718

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KaryoploteR

6.2 years ago Radek ▴ 90

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644

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karyoploteR

updated 4.4 years ago by bernatgel ▴ 150 • written 4.4 years ago by saeed Ur Rehman • 0

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630

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KaryoploteR

updated 3.1 years ago by Kevin Blighe 3.8k • written 3.1 years ago by mpigozzi • 0

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202

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GenomicFeatures karyoploteR TxDb.Hsapiens.UCSC.hg19.knownGene

5 months ago Shreyash • 0

8 results • Page 1 of 1

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Comment: DataFrame Construction With Non-standard Column by Hervé Pagès 16k

SimpleList is a List derivative and List derivatives in general don't need protection. For example, a GRangesList object (which is also a L…

Answer: Deseq2, how to model design for comparing Mutant mouse at age 14 days versus Mu by swbarnes2 ★ 1.3k

The Status grouping you show above is good to use if you want to simply compare one subset of samples to another subset. The ~Genotype +…

Answer: Remove duplicates of colData in TreeSummarizedExperiment by Michael Love 40k

Copying my code from Slack for posterity. James' code is more streamlined for this step I think. ``` # make a dataset that has duplicate s…

Comment: DataFrame Construction With Non-standard Column by James W. MacDonald 63k

Oh, ok. I understand. Technically both should work according to what the help page for `DataFrame` says (both `SimpleList` and `list` have …

Comment: DeSeq2 design fails (full model matrix is less than full rank) by Basti ▴ 720

As recommended, you can only perform ~group. You can use contrasts do perform the comparison AA5 vs FHIN1 (see [DESeq2 vignette][1]), but t…

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Answer: Further analysis after limma regression output

A: collapseReplicates in DESeq2

Answer: DataFrame Construction With Non-standard Column

Steps needed to change design (relevel factors) in DESeq2

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