Bioconductor Kegg

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KEGG DESeq2 biomaRt clusterProfiler org.Mm.eg.db

updated 8 months ago by Guido Hooiveld ★ 3.9k • written 8 months ago by Milan ▴ 10

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KEGG gometh

updated 11 months ago by Aung • 0 • written 13 months ago by pedro-marra ▴ 10

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546

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timecourse KEGG DESeq2

updated 10 months ago by Michael Love 41k • written 10 months ago by Fred • 0

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cluster clusterProfiler KEGG

12 months ago • updated 11 months ago ruba-mahmoud • 0

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230

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enrichKEGG KEGGgraph KEGG

updated 8 weeks ago by Guido Hooiveld ★ 3.9k • written 9 weeks ago by cinzia.spagnoli • 0

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149

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Pathways clusterProfiler gseKEGG KEGG

7 days ago • updated 6 days ago julia_mcdonough • 0

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KEGG limma

written 13 months ago by andrewsm • 0

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clusterProfiler enrichment KEGG

updated 9 weeks ago by cinzia.spagnoli • 0 • written 22 months ago by AP • 0

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pathview kegg KEGG

updated 6 months ago by Benji Bromberg ▴ 20 • written 7 months ago by Mauricio Diego • 0

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KEGG clusterProfiler

updated 3 months ago by Guido Hooiveld ★ 3.9k • written 13 months ago by ruiqi.li ▴ 10

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KEGG GAGE NaN R DESeq2

updated 11 months ago by Rob • 0 • written 5.5 years ago by owen.donohoe • 0

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336

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axolotl KEGG GOstats clusterProfiler

9 months ago georgii.vdovin • 0

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336

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KEGGREST KEGG RNASeq

5 months ago mch • 0

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kegg enrichkegg clusterprofiler

updated 4 months ago by EvaLan • 0 • written 5.7 years ago by bekah ▴ 40

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pathview KEGG Oryza_sativa

10 months ago Jiyoung Lee • 0

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KEGGREST GenomicDistributionsData KEGGgraph KEGG

53 minutes ago fernanda.backsouza • 0

16 results • Page 1 of 1

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Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Chris • 0

Hi Robert, If I don't want to use all pathway in c2 gene set but only a few pathways of interested, how can I do that? So we try to get a …

Comment: How to retrieve detailed regression results from deseq2 by Weiqian ▴ 10

Hi Michael, thanks for the answer! I'll have a look : )

Comment: DESeq filtering specific to contrasts by Michael Love 41k

It will likely not filter it out, but really the per-dataset details would affect the results.

Comment: DESeq filtering specific to contrasts by Carlin95 • 0

Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…

Comment: FilterByExpr low counts with small sample size by Jonathan ▴ 10

Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…

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Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

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Popular Question to James W. MacDonald 65k