Biostar Kegg

Showing : Kegg • reset

2

votes

3

replies

141

views

KEGG gometh

updated 5 days ago by James W. MacDonald 62k • written 11 days ago by pedro-marra ▴ 10

4

votes

2

replies

365

views

KEGG clusterProfiler

updated 19 days ago by Erqiang Hu ▴ 30 • written 19 days ago by redafazazi • 0

1

vote

7

replies

242

views

KEGG clusterProfiler keggorthology

updated 18 days ago by Basti ▴ 700 • written 20 days ago by ruiqi.li • 0

1

vote

4

replies

152

views

KEGG clusterProfiler

20 days ago • updated 19 days ago ruiqi.li • 0

4 results • Page 1 of 1

Recent ...

Replies

Comment: minfi support of illumina Infinium methylationEPIC v2.0 by luca.s ▴ 40

Tank you James. All fine, but for preprocessIllumina, which apparently won't work

Comment: Time-course, comparison of two groups by boczniak767 ▴ 720

As an exercise I've tried to analyze simpler but similar experiment. The data is from real experiment (E-MTAB-11224) comparing wild type an…

Answer: How to getting synonymous SNPs from BiomaRt before timing out? by James W. MacDonald 62k

Asking for multiple things at once will tend to blow out your results, as you will get every possible combination. ``` > options(timeou…

Comment: Definition of disease_subtype abbreviations by Lucas Schiffer ▴ 240

Hi Sehyun, I do not know myself and can only find one reference in the [template.csv](https://github.com/waldronlab/curatedMetagenomicDataC…

Answer: Are polynomial contrasts for a time factor possible in DESeq2? by ATpoint ★ 2.4k

As you can use a model.matrix() as input for the design you can use a great variety of models. A great read is this work from Ritchie/Smyth…

Votes

Answer: minfi support of illumina Infinium methylationEPIC v2.0

Answer: Are polynomial contrasts for a time factor possible in DESeq2?

Are polynomial contrasts for a time factor possible in DESeq2?

Answer: How to deal with the negative values from EBPlusPlusAdjustPANCAN_IlluminaHiSeq_R

Comment: TxDB.Hsapiens.UCSC.hg38.knownGene with locateVariants() identifying SNPs from va

Awards • All

Scholar to Gordon Smyth 47k

Popular Question to Robert Castelo ★ 3.0k