Bioconductor Kegg

Showing : Kegg • reset

votes

replies

147

views

Pathways clusterProfiler gseKEGG KEGG

6 days ago julia_mcdonough • 0

votes

replies

229

views

enrichKEGG KEGGgraph KEGG

updated 8 weeks ago by Guido Hooiveld ★ 3.9k • written 8 weeks ago by cinzia.spagnoli • 0

vote

replies

1.8k

views

clusterProfiler enrichment KEGG

updated 8 weeks ago by cinzia.spagnoli • 0 • written 22 months ago by AP • 0

votes

replies

1.9k

views

KEGG clusterProfiler

updated 3 months ago by Guido Hooiveld ★ 3.9k • written 13 months ago by ruiqi.li ▴ 10

votes

1.5k

views

kegg enrichkegg clusterprofiler

updated 4 months ago by EvaLan • 0 • written 5.7 years ago by bekah ▴ 40

votes

replies

335

views

KEGGREST KEGG RNASeq

5 months ago mch • 0

votes

replies

1.2k

views

KEGG limma

written 13 months ago by andrewsm • 0

votes

replies

1.1k

views

pathview kegg KEGG

updated 6 months ago by Benji Bromberg ▴ 20 • written 7 months ago by Mauricio Diego • 0

votes

replies

1.0k

views

KEGG DESeq2 biomaRt clusterProfiler org.Mm.eg.db

updated 8 months ago by Guido Hooiveld ★ 3.9k • written 8 months ago by Milan ▴ 10

votes

replies

335

views

axolotl KEGG GOstats clusterProfiler

9 months ago georgii.vdovin • 0

vote

replies

1.0k

views

pathview KEGG Oryza_sativa

10 months ago Jiyoung Lee • 0

votes

546

views

timecourse KEGG DESeq2

updated 10 months ago by Michael Love 41k • written 10 months ago by Fred • 0

votes

replies

2.4k

views

KEGG gometh

updated 11 months ago by Aung • 0 • written 13 months ago by pedro-marra ▴ 10

votes

1.4k

views

KEGG GAGE NaN R DESeq2

updated 11 months ago by Rob • 0 • written 5.5 years ago by owen.donohoe • 0

votes

replies

1.3k

views

cluster clusterProfiler KEGG

12 months ago • updated 11 months ago ruba-mahmoud • 0

15 results • Page 1 of 1

Recent ...

Replies

Answer: OrgDb for maize by Guido Hooiveld ★ 3.9k

I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …

Comment: Theoretical WGCNA Question by Garrett • 0

Thanks Peter!

Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0

Thank you!

Comment: FGSEA pre-ranked input in increasing order or decreasing by alserg ▴ 240

They are reorder in the decreasing order.

Comment: significant difference of p-values with dream() after updating VariancePartition by Le • 0

Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…

Votes

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

Comment: DEXSeq DEXSeqDataSet count matrix duplication

Comment: Error in champ.load(): The following specified files do not exist

Awards • All