Bioconductor LC-MS/MS

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XCMS LC-MS LC-MS/MS Alignment

updated 3.4 years ago by Johannes Rainer ★ 2.0k • written 3.4 years ago by ljveillon • 0

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proteomics LC-MS/MS

updated 4.5 years ago by Laurent Gatto 1.6k • written 4.5 years ago by pdaltron • 0

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msnbase msmstests proteomics lc-ms/ms msnID

updated 4.6 years ago by Laurent Gatto 1.6k • written 4.6 years ago by fgol ▴ 10

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Comment: Setting up a multi-factor experiement by john.briseno • 0

thanks, will do! we work with a non-model organism, but perhaps the folks who do our genomics/sequencing have some input.

Comment: Mixed up sample info with plotPCA by Michael Love 40k

Just as a note, if the sample info table had been named (that is `rownames(sampleInfo)` not `NULL`, DESeq2 would have been able to detect t…

Comment: Mixed up sample info with plotPCA by sara.jacobson • 0

You were correct. The order of my samples in my sample info-file did not match the order of the samples in my count data file. Thank you!

Answer: Delete all profiles by shepherl 3.5k

Please send requests to webmaster@bioconductor.org providing more details like the full emails associated with the accounts. Thank you

Comment: Mixed up sample info with plotPCA by Michael Love 40k

Check colnames of count data. I think you are providing these in different order to DESeq2.

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Answer: Setting up a multi-factor experiement

Answer: Mouse to Human Genes using bioconductor

Mouse to Human Genes using bioconductor

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