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LEA
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599
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LEA get Q-matrix from best snmf() run
LEA
23 months ago
janis
• 0
0
votes
0
replies
562
views
LEA package (3.6.0): tracy-widom test problems
tracy-widom
PCA
LEA
2.1 years ago
Bruna
• 0
0
votes
0
replies
552
views
Zeros in p values in snmf analysis from LEA packge
LEA
snmf
2.3 years ago
Hanan
• 0
0
votes
3
replies
2.3k
views
internal error in trio library when trying to use lfmm() in LEA package
lfmm
LEA
updated 4 weeks ago by
m.charters
• 0 • written 2.9 years ago by
valentinarov
• 0
0
votes
1
reply
1.6k
views
R aborts when attempting to use snmf function in LEA package
snmf
lea
updated 6.8 years ago by
olivier.francois
• 0 • written 6.8 years ago by
renee.catullo
• 0
0
votes
2
replies
2.3k
views
Tutorial:
LEA won't run lfmm sequentially and independently on individual environmental variables when d set to 0
LEA
lfmm
Tutorial
updated 6.9 years ago by
eric.frichot
• 0 • written 6.9 years ago by
afreedman405
• 0
6 results • Page
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Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR)
by
Michael Love
41k
> I got many p values that had "1.000000e+00" and padj "1" and stat of "0" when I added the Log threshold of LFC >1 and LFC < -1...is this …
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴ 10
With all my love, thank you Guido, GOxploreR beeing a big ally for me. I don't know how to be grateful right now.
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.
Answer: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
swbarnes2
★ 1.3k
Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…
Comment: get BM error
by
James W. MacDonald
65k
I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
Votes
C: when to apply quantile normalization with voom in limma/voom framework with RNA-
A: How to know if I should use voomWithQualityWeights() or not?
A: Weird results (ribosomal proteins / Y-linked genes) in limma/voom
Answer: Log-cpm values from limma
Answer: Log-cpm values from limma
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