Bioconductor LIMMA

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limma RNASeq voom

updated 21 hours ago by Gordon Smyth 50k • written 22 hours ago by taur.vil • 0

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138

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technicalReplicates BatchEffect limma RNASeq

4 days ago • updated 1 day ago catv • 0

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723

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limma

updated 1 day ago by Robert Castelo ★ 3.3k • written 3 days ago by Chris • 0

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104

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limma edgeR RNASeq

updated 4 days ago by Gordon Smyth 50k • written 5 days ago by Shaimaa Gamal • 0

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230

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DNAMethylation limma methylationArrayAnalysis

6 days ago • updated 12 hours ago hortense96 • 0

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842

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limma

12 days ago • updated 5 days ago Chris • 0

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1.8k

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limma

25 days ago • updated 3 days ago Chris • 0

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1.2k

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RUVSeq sva limma

updated 5 days ago by Gordon Smyth 50k • written 7 months ago by Jonathan ▴ 10

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8.7k

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limma batch effect covariates microarray

updated 12 hours ago by hortense96 • 0 • written 7.7 years ago by dmcleanuk ▴ 30

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Comment: minfi::read.metharray.exp by clacarion • 0

I think its work with `read.metharray.sheet` ```r > sheet <- read.metharray.sheet("/Users/clarachretienneau/Desktop/clock_epigenetic/PJ120…

Comment: minfi::read.metharray.exp by clacarion • 0

Thank you for your response Basti ! I add all the idat files in a unique folder called "idat" and add it in my path ```r > list.files("…

Answer: List of Deprecated Packages for Bioc3.19 by shepherl 3.8k

singleCellTK has been fixed and will remain in Bioconductor

Comment: Trying to use enrichGO by fernanda.backsouza ▴ 10

Yes, I'm working only with genes from terpenoids pathway (14 genes), so I can't use enrichGO? Can you recommend a package or something like…

Comment: Trying to use enrichGO by fernanda.backsouza ▴ 10

Your awnser at Cannabis orgDb solve my problems using enrichGO by far. I'm underdegree biotechnology student, and I learning bioinformatic…

Votes

Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)

Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.

Answer: minfi::read.metharray.exp

Comment: Trying to use enrichGO

Answer: Cannabis OrgDb

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