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Limma
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reset
2
votes
5
replies
830
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Dealing with heteroscedascity in limma
limma
splines
Proteomics
written 5 days ago by
Thomas
• 0
5
votes
6
replies
2.0k
views
limma correction for tumor purity
limma
updated 3 days ago by
Gordon Smyth
52k • written 5 days ago by
gabriella.jacobson-eisenberg
▴ 20
0
votes
3
replies
671
views
Model performance for spline modelling of RNA-seq timecourses in edgeR
edgeR
limma
written 4 weeks ago by
skiaphrene
▴ 10
0
votes
4
replies
502
views
Check removeBatchEffect effectiveness
RNAseq
limma
removeBatchEffect
updated 5 days ago by
Gordon Smyth
52k • written 14 days ago by
massimo
• 0
0
votes
0
replies
229
views
Significant Probes and Genes differ in Probe and Region level Differential Methylation Analyses
limma
probe
DMRcate
GenomicRanges
DifferentialMethylation
15 days ago
jamiecatalano2
• 0
2
votes
1
reply
436
views
ROAST for small sets
limma
mroast
updated 18 days ago by
Gordon Smyth
52k • written 19 days ago by
Jay
• 0
2
votes
4
replies
1.6k
views
how to use `arrayWeightsQuick()`?
limma
updated 5 days ago by
TraceMorrow
• 0 • written 4 weeks ago by
matthew
• 0
4
votes
0
replies
3.2k
views
Evidence-based guidelines for use the method="robust" option in lmFit
Microarray
Normalization
Bayesian
Regression
Cancer
limma
Microarray
Normalization
Cancer
updated 5 days ago by
Thomas
• 0 • written 14.0 years ago by
Richard Friedman
★ 2.0k
0
votes
3
replies
2.1k
views
RE:proper pooling design
Microarray
Normalization
affy
makecdfenv
limma
marray
Microarray
Normalization
affy
limma
updated 27 days ago by
bicecac533
• 0 • written 21.3 years ago by
Stephen Moore
▴ 70
9 results • Page
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Comment: EuroBioC2023 abstract submission is open!
by
arden
• 0
Woohoo! Abstract submission for EuroBioC2023 is open! Time to dust off my research and get those submissions ready. Hope to see some awesom…
Comment: Gene Ontology (GO) Analysis
by
GA
▴ 10
Thank you!
Comment: DESEQ2 - Correctly altering log2foldchange when switching comparison direction (
by
sk
• 0
If I use factor to create the Condition_SCR_vs_WT coef, then the other chefs would be Condition_KD1_vs_WT and Condition_KD2_vs_WT, but I ne…
Comment: How to load scRNA-seq data from GEO
by
petergrahamclark
• 0
the paper I'm working off suggests removing all cells where the UMI is less than 2000. I assume we don't have enough data for umi counts. c…
Comment: How to load scRNA-seq data from GEO
by
Gordon Smyth
52k
I suggest you use readMM() as advised by James, but then do a massive amount of cell filtering before doing any other conversions or creati…
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Comment: How to load scRNA-seq data from GEO
limma correction for tumor purity
limma correction for tumor purity
Answer: limma correction for tumor purity
Answer: limma correction for tumor purity
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