Bioconductor Limma

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684

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CAMERA limma

updated 27 days ago by Gordon Smyth 52k • written 28 days ago by Jay • 0

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1.3k

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limma

updated 12 days ago by Gordon Smyth 52k • written 13 days ago by matthew • 0

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2.1k

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Microarray Normalization affy makecdfenv limma marray Microarray Normalization affy limma

updated 9 days ago by bicecac533 • 0 • written 21.3 years ago by Stephen Moore ▴ 70

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1.2k

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edgeR limma

updated 27 days ago by ATpoint ★ 4.8k • written 28 days ago by robinpaul85 • 0

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452

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edgeR limma

updated 9 days ago by Gordon Smyth 52k • written 14 days ago by skiaphrene ▴ 10

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limma mroast

updated 1 hour ago by Gordon Smyth 52k • written 17 hours ago by Jay • 0

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Answer: EuroBioC2024 abstract submission is open! by Ali • 0

[Promo products][1] are a smart way to boost visibility, especially with exciting updates like *News: EuroBioC2024 abstract submission is o…

Answer: ROAST for small sets by Gordon Smyth 52k

The p-values from `mroast` will be the same (up to sampling variability associated with random rotations) regardless of whether you test al…

Comment: FlowSOM library requires igraph but igraph does not install by Szabolcs • 0

The R/igraph Installation FAQ covers most issues: https://r.igraph.org/articles/installation-troubleshooting.html

Comment: edgeR::cpm() results in negative values from raw counts of 0 by Kinnary ▴ 20

Thank you very much for the vis suggestion!

Comment: edgeR::cpm() results in negative values from raw counts of 0 by Kinnary ▴ 20

Thank you very much - I appreciate the mathematical explanation and link to Dr. Phipson's thesis!

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A: conceptual question about FDR, FDR adjusted p-value and q-value

Comment: edgeR::cpm() results in negative values from raw counts of 0

Answer: edgeR::cpm() results in negative values from raw counts of 0

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