Bioconductor Limma

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Microarray Normalization affy makecdfenv limma marray Microarray Normalization affy limma

updated 8 days ago by bicecac533 • 0 • written 21.3 years ago by Stephen Moore ▴ 70

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limma

updated 11 days ago by Gordon Smyth 52k • written 13 days ago by matthew • 0

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edgeR limma

updated 27 days ago by ATpoint ★ 4.8k • written 28 days ago by robinpaul85 • 0

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684

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CAMERA limma

updated 27 days ago by Gordon Smyth 52k • written 28 days ago by Jay • 0

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edgeR limma

updated 9 days ago by Gordon Smyth 52k • written 14 days ago by skiaphrene ▴ 10

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limma mroast

9 hours ago Jay • 0

6 results • Page 1 of 1

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Comment: FlowSOM library requires igraph but igraph does not install by Szabolcs • 0

The R/igraph Installation FAQ covers most issues: https://r.igraph.org/articles/installation-troubleshooting.html

Comment: edgeR::cpm() results in negative values from raw counts of 0 by Kinnary ▴ 20

Thank you very much for the vis suggestion!

Comment: edgeR::cpm() results in negative values from raw counts of 0 by Kinnary ▴ 20

Thank you very much - I appreciate the mathematical explanation and link to Dr. Phipson's thesis!

Comment: edgeR::cpm() results in negative values from raw counts of 0 by Kinnary ▴ 20

Thank you very much - this is very clear!

Answer: How do I set up my DESeq analysis when I know a few vehicle control samples prov by Michael Love 43k

I think it will capture it automatically. E.g. if you use the method that focuses on genes lowly or not affected by the treatment, then the…

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Comment: edgeR::cpm() results in negative values from raw counts of 0

Answer: edgeR::cpm() results in negative values from raw counts of 0

edgeR::cpm() results in negative values from raw counts of 0

Answer: edgeR::cpm() results in negative values from raw counts of 0

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