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Answer: What is the meaning of "CpG interrogation" and "single nucleotide extension(SBE)
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There are two types of probes used by Illumina. The type I probes bind directly to the CpG site and have two different probes (one for a me…
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Then for the remaining genes that you don't think are DE, just plot like this:
```
dds_sub <- dds[,dds$condition %in% c("x","y")]
dropleve…
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samer
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yes i turned it off @mikelove
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It looks like `autonomics` uses `BiocFileCache` to create a local copy of the data and save repeat downloading. Given the (relatively) rec…
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I notice you are using `betaPrior=TRUE`. We have set to default and recommended `betaPrior=FALSE` for many years (since version 1.16 in 201…
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