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Comment: Why is DMRcate not available for Bioconductor version 3.18?
by
Daniel E. Weeks
▴
20
Thank you for the explanation and contacting the DSS package authors.
Comment: Why is DMRcate not available for Bioconductor version 3.18?
by
shepherl
3.6k
The DSS package authors just need to add `edgeR` to their Suggest of their DESCRIPTION. They have been contacted about it but have not acte…
Answer: GOslim missing GO term
by
James W. MacDonald
64k
I think it's because that GO term isn't an offspring of any term in the GO slim you are downloading.
```
> ids<- "GO:0002831"
> slim <…
Answer: Obtaining rsIDs with ENSG and variant ID information
by
Robert Castelo
★
3.0k
You should first and foremost find out what was the human reference genome version from which your dataset was derived. Assuming this was G…
Comment: DESeq2 - groups with biological replicates from the same patient
by
James W. MacDonald
64k
If by clustering you mean there might be a within-subject correlation, then yes it's a possibility. But you cannot control for that using a…
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