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Linux
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tximport ERROR : all(file.exists(files)) is not TRUE
Linux
R
tximport
2.1 years ago
nakane_clan
• 0
0
votes
4
replies
4.3k
views
Problems Installing biomaRt
biomart
linux
updated 3.3 years ago by
Martin Morgan
25k • written 6.0 years ago by
christopher.mcfall
• 0
1
vote
6
replies
1.3k
views
How to install DEXSeq on R 3.4.4
DEXSEq
Linux
updated 5.0 years ago by
Alejandro Reyes
★ 1.9k • written 5.0 years ago by
justinkablan225
• 0
0
votes
1
reply
977
views
ChemmineOB Installation RHEL
ChemmineOB
Linux
Installation
5.1 years ago
jandrosavich
• 0
0
votes
2
replies
5.3k
views
[Resolved] RcppArmadillo pckg ERRORS : non-zero exit status (and so DESeq2 also)
DESEq2
R
linux
RcppArmadillo
5.2 years ago
RS1
• 0
0
votes
0
replies
983
views
Job:
Bioinformatician ('CHBIO15) (m/f)
bioinformatician job
Linux
NGS
Job
5.4 years ago
l.brown
▴ 10
0
votes
0
replies
1.2k
views
Job:
Bioinformatics Engineer / Data Analyst
python
bio
ngs
linux
Job
6.1 years ago
EMBL Recruitment
• 0
1
vote
0
replies
1.4k
views
Problems running oligo functions in parallel on a linux computer
biocparallel
oligo
rma
linux
parallel
6.3 years ago
s.munster
▴ 40
0
votes
1
reply
1.3k
views
rhdf5 h5ls output differs from Linux to Windows
R
h5ls
windows
linux
updated 6.4 years ago by
Mike Smith
★ 6.5k • written 6.5 years ago by
maxime.fortin
• 0
1
vote
4
replies
2.0k
views
Rsubread install problems on CentOS 6.8/R3.4.1/gcc/4.8.2
linux
rsubread
installation
updated 6.8 years ago by
Mike Smith
★ 6.5k • written 6.8 years ago by
hjmangalam
• 0
0
votes
6
replies
2.3k
views
Chipseeker is unavabile on Linux CentOS7 ?
Bioconduct or
Chipseeker
CentOS7
Linux
installation
updated 7.5 years ago by
Guangchuang Yu
★ 1.2k • written 7.5 years ago by
spsp9987
• 0
0
votes
4
replies
2.8k
views
Unable to install Rcpp package for genefo
Rcpp
genefo
linux
linux mint
Rstudio
updated 7.7 years ago by
mfox
• 0 • written 7.7 years ago by
anjali.krishna1008
• 0
0
votes
1
reply
1.2k
views
R slow, using all physical memory and 20GB Virt
linux
r
phylogenetic
computational biology
updated 8.8 years ago by
Hervé Pagès
16k • written 8.8 years ago by
guilherme
• 0
3
votes
1
reply
1.2k
views
best server maintenance practices
linux
R
server
updated 9.6 years ago by
James W. MacDonald
65k • written 9.6 years ago by
Matthew McCormack
▴ 180
14 results • Page
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Comment: Which input file is used for DGEList in EgdeR?
by
Michael Love
41k
"gene_counts_length_scaled.tsv file generated by the nf-core be exactly that?" No that is the counts scaled by the length. Counts + offset…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
by
Michael Love
41k
These genes are fine. They are just the ones where, by chance, the sample variance is below the sample mean. It happens. DESeq2 brings thes…
Comment: DEG with low counts
by
Michael Love
41k
These counts are too low, only a few samples above a count of 10. So for typical RNA-seq data that is underpowered to call differences. It…
Comment: DESeq filtering specific to contrasts
by
Michael Love
41k
If the counts are too low it in one group then you can't make the comparison either way (whether they are filtered out or just under-powere…
Comment: Estimating Cell Counts for EPIC V2 array data
by
normawiedman059
• 0
0 [103] spam_2.9-1 doParallel_1.0.17 iterators_1.0.14 [106] foreach_1.5.2 beeswarm_0.4.0 tgp_2.4-20 [109] beanplot_1.3.1 fpc_2.2-9 dbscan_1…
Votes
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
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