Showing : Log2 • reset
3
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6
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Limma: log2 of TMM values for RNA-Seq Analysis and PlotMDS()?
Log2 edgeR RNA limma Normalization
2.2 years ago Sara • 0
6
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8
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6.7k
views
Does limma calculate pvalues using log2 fold changes or with linear values?
limma pvalue log2fc log2
updated 2.1 years ago by 67k • written 8.8 years ago by ▴ 60
3
votes
1
reply
2.3k
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log2 of normalized counts for further analyzes
DESeq2 log2 normalized counts
updated 23 months ago by 67k • written 23 months ago by ▴ 10
0
votes
1
reply
1.1k
views
First time Statistical Analysis of RNA-seq
edgeR RNA-Seq log2 foldchange q_value
updated 3.0 years ago by 52k • written 3.0 years ago by • 0
0
votes
8
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3.3k
views
DESeq2 different log2FC and p-value filtering parameters results comparison
log2 DESeq2
2.5 years ago User000 • 0
2
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4
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3.3k
views
exporting limma log2 data
limma export log2 data agilent
updated 10.3 years ago by 67k • written 10.3 years ago by ▴ 110
0
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1
reply
2.6k
views
How to plot the RMA log2 normalised data from Affymetrix
log2 RMA Affymetrix affy Normalization
updated 3.9 years ago by ★ 4.0k • written 3.9 years ago by • 0
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0
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1.1k
views
PROBLEM WITH MFUZZ
mfuzz fold change log2 STANDARDISATION
6.6 years ago prakashpandey1111 • 0
0
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0
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1.6k
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DESeq2: Extract mean normalized log2 counts by level
normalized counts log2
6.3 years ago agdif ▴ 10
0
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0
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953
views
NMF pre-processsing effect on classification
NMF log2 classification bioconductor
6.6 years ago Seymoo • 0
10 results • Page 1 of 1
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Comment: Problems with oarfish + tximport + swish by Michael Love 43k
Great thanks for posting the issue and sticking with it Annaleigh
Comment: Problems with oarfish + tximport + swish by brown.annaleigh • 0
Awesome possum! Update works!! Thank you so much for the help and guidance!
Comment: Postdoctoral Researcher in Spatial Gene Regulatory Networks underlying Stomatal by iqratechnology4 • 0
Iqra Technology is IT Solutions and Services Company. We are salesforce and Microsoft partner company. https://iqratechnology.com/
Comment: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt? by James W. MacDonald 67k
> BTW, shouldn't you be using keep.lib.sizes = F and re-do the calcNormFactors() after filtering of the dglst low-expression ENSGs, as Gord…
Comment: Problems with oarfish + tximport + swish by Michael Love 43k
Let me see if I can add some code to tximeta to cover this case. I've added an argument `skipRanges` in devel branch which should allow: …
Votes
Answer: Error in download.file for TCGAutils::symbolsToRanges
Answer: Error in download.file for TCGAutils::symbolsToRanges
Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
Answer: Limma Interaction Effect with Covariates
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Scholar to James W. MacDonald 67k
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