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log2 DESeq2

2.5 years ago User000 • 0

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6.7k

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limma pvalue log2fc log2

updated 2.2 years ago by James W. MacDonald 67k • written 8.8 years ago by serpalma.v ▴ 60

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Log2 edgeR RNA limma Normalization

2.2 years ago Sara • 0

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limma export log2 data agilent

updated 10.3 years ago by James W. MacDonald 67k • written 10.3 years ago by Jahn Davik ▴ 110

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DESeq2 log2 normalized counts

updated 24 months ago by James W. MacDonald 67k • written 24 months ago by Laia ▴ 10

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log2 RMA Affymetrix affy Normalization

updated 3.9 years ago by Kevin Blighe ★ 4.0k • written 3.9 years ago by Lara • 0

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edgeR RNA-Seq log2 foldchange q_value

updated 3.0 years ago by Gordon Smyth 52k • written 3.0 years ago by johndavidgriner74 • 0

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normalized counts log2

6.4 years ago agdif ▴ 10

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mfuzz fold change log2 STANDARDISATION

6.6 years ago prakashpandey1111 • 0

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957

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NMF log2 classification bioconductor

6.6 years ago Seymoo • 0

10 results • Page 1 of 1

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Answer: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Following the discussion of this post, the package [gDNAx](https://bioconductor.org/packages/gDNAx) has been fixed in devel and release 1.4…

Answer: Selection of correct coefficients or contrasts in DESeq2 by James W. MacDonald 67k

Using R's model formulation for three-way interactions is probably not the way to go here. Or at least I wouldn't do it that way. An easier…

Comment: How to generate circular cnetplot and color nodes and edges in the same plot ? by Blandine • 0

Thank you so much ! It's working !

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by James W. MacDonald 67k

Yes. If you have the Illumina IDs, then all the annotation data that `cpg.annotate` uses will be based on hg19. It doesn't matter if TCGA l…

Comment: Recount3 data correspond to TCGA data by Leonardo Collado Torres ★ 1.1k

Thanks @fep29! ^^

Votes

A: DESeq2 interaction term

Comment: Recount3 data correspond to TCGA data

Answer: DESeq2- merging technical vs biological replicates

Answer: SingleCellExperiment convenience function for metadata+expression?

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

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Popular Question to Robert Castelo ★ 3.4k

Popular Question to Robert Ivanek ▴ 750