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Log2
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0
votes
8
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2.5k
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DESeq2 different log2FC and p-value filtering parameters results comparison
log2
DESeq2
20 months ago
User000
• 0
6
votes
8
replies
5.6k
views
Does limma calculate pvalues using log2 fold changes or with linear values?
limma
pvalue
log2fc
log2
updated 16 months ago by
James W. MacDonald
65k • written 8.0 years ago by
serpalma.v
▴ 60
3
votes
6
replies
1.8k
views
Limma: log2 of TMM values for RNA-Seq Analysis and PlotMDS()?
Log2
edgeR
RNA
limma
Normalization
16 months ago
Sara
• 0
2
votes
4
replies
3.0k
views
exporting limma log2 data
limma
export
log2
data
agilent
updated 9.5 years ago by
James W. MacDonald
65k • written 9.5 years ago by
Jahn Davik
▴ 110
3
votes
1
reply
1.3k
views
log2 of normalized counts for further analyzes
DESeq2
log2
normalized
counts
updated 13 months ago by
James W. MacDonald
65k • written 13 months ago by
Laia
▴ 10
0
votes
1
reply
1.9k
views
How to plot the RMA log2 normalised data from Affymetrix
log2
RMA
Affymetrix
affy
Normalization
updated 3.1 years ago by
Kevin Blighe
★ 3.9k • written 3.1 years ago by
Lara
• 0
0
votes
1
reply
861
views
First time Statistical Analysis of RNA-seq
edgeR
RNA-Seq
log2
foldchange
q_value
updated 2.2 years ago by
Gordon Smyth
50k • written 2.2 years ago by
johndavidgriner74
• 0
0
votes
0
replies
1.3k
views
DESeq2: Extract mean normalized log2 counts by level
normalized counts
log2
5.5 years ago
agdif
▴ 10
0
votes
0
replies
911
views
PROBLEM WITH MFUZZ
mfuzz
fold change
log2
STANDARDISATION
5.8 years ago
prakashpandey1111
• 0
0
votes
0
replies
770
views
NMF pre-processsing effect on classification
NMF
log2
classification
bioconductor
5.8 years ago
Seymoo
• 0
10 results • Page
1 of 1
Recent ...
Replies
Comment: limma models out of memory issue on Slurm HPC
by
Jitendra
▴ 10
thanks Gordon, but our methylation epic array input file is quite big and we can't read it in R by just using laptop memory so we need to …
Comment: Doing comparison of RNA-seq data using EdgeR
by
Michael Love
41k
Just to clarify, when I originally posted the title and tags had listed "DESeq2" and then the post was changed after my answer was added. …
Comment: fgsea fork
by
shepherl
3.8k
Not quite sure what you mean by clone or fork the package on latest version of R. Bioconductor runs all builds on the latest version of R.…
Answer: Doing comparison of RNA-seq data using EdgeR
by
Gordon Smyth
50k
It's pretty easy to do a two-group comparison using edgeR, but you seem to be stuck at the initial stage of reading data into R. If you exp…
Answer: Differing results from plotMDS and PCAtools
by
Gordon Smyth
50k
The reason why the two plots are different is that the first plot is a PCA plot while the second is a biplot. Quite different plots. The P…
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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