Showing : Log2 • reset
3
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1.4k
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log2 of normalized counts for further analyzes
DESeq2 log2 normalized counts
updated 14 months ago by 65k • written 14 months ago by ▴ 10
6
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8
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5.7k
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Does limma calculate pvalues using log2 fold changes or with linear values?
limma pvalue log2fc log2
updated 17 months ago by 65k • written 8.1 years ago by ▴ 60
3
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6
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1.9k
views
Limma: log2 of TMM values for RNA-Seq Analysis and PlotMDS()?
Log2 edgeR RNA limma Normalization
17 months ago Sara • 0
0
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8
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2.6k
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DESeq2 different log2FC and p-value filtering parameters results comparison
log2 DESeq2
21 months ago User000 • 0
0
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1
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878
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First time Statistical Analysis of RNA-seq
edgeR RNA-Seq log2 foldchange q_value
updated 2.3 years ago by 50k • written 2.3 years ago by • 0
0
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1
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1.9k
views
How to plot the RMA log2 normalised data from Affymetrix
log2 RMA Affymetrix affy Normalization
updated 3.1 years ago by ★ 3.9k • written 3.1 years ago by • 0
0
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0
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1.4k
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DESeq2: Extract mean normalized log2 counts by level
normalized counts log2
5.6 years ago agdif ▴ 10
0
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0
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920
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PROBLEM WITH MFUZZ
mfuzz fold change log2 STANDARDISATION
5.8 years ago prakashpandey1111 • 0
0
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0
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780
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NMF pre-processsing effect on classification
NMF log2 classification bioconductor
5.9 years ago • updated 5.8 years ago Seymoo • 0
2
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4
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3.0k
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exporting limma log2 data
limma export log2 data agilent
updated 9.5 years ago by 65k • written 9.5 years ago by ▴ 110
10 results • Page 1 of 1
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Answer: Cannabis and KEGGgraph by deeenes ▴ 30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
Answer: RNAseq:Technical replicates from different batches by Gordon Smyth 50k
I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…
Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param by russ.bainer ▴ 10
Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Chris • 0
Hi Robert, If I don't want to use all pathway in c2 gene set but only a few pathways of interested, how can I do that? So we try to get a …
Comment: How to retrieve detailed regression results from deseq2 by Weiqian ▴ 10
Hi Michael, thanks for the answer! I'll have a look : )
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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