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5.6k

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limma pvalue log2fc log2

updated 16 months ago by James W. MacDonald 65k • written 8.0 years ago by serpalma.v ▴ 60

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1.9k

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Log2 edgeR RNA limma Normalization

17 months ago Sara • 0

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1.4k

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DESeq2 log2 normalized counts

updated 14 months ago by James W. MacDonald 65k • written 14 months ago by Laia ▴ 10

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3.0k

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limma export log2 data agilent

updated 9.5 years ago by James W. MacDonald 65k • written 9.5 years ago by Jahn Davik ▴ 110

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1.4k

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normalized counts log2

5.6 years ago agdif ▴ 10

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1.9k

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log2 RMA Affymetrix affy Normalization

updated 3.1 years ago by Kevin Blighe ★ 3.9k • written 3.1 years ago by Lara • 0

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874

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edgeR RNA-Seq log2 foldchange q_value

updated 2.3 years ago by Gordon Smyth 50k • written 2.3 years ago by johndavidgriner74 • 0

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2.6k

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log2 DESeq2

21 months ago User000 • 0

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919

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mfuzz fold change log2 STANDARDISATION

5.8 years ago prakashpandey1111 • 0

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777

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NMF log2 classification bioconductor

5.8 years ago Seymoo • 0

10 results • Page 1 of 1

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Comment: Memory errors using read.bismark? by Juan Higareda • 0

Thanks for the answer. Actually, processing one file and keeping it in memory wasn't the problem, is more processing all the 15 files to bu…

Answer: Differentially expressed genes in monocle pseudotime by Gordon Smyth 50k

You might try the methods in this paper: Cheng J, Smyth GK*, Chen Y* (2023). Unraveling the timeline of gene expression: A pseudotempora…

Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Seyram M. • 0

Thank you Michael for your attention to my question. I am truly grateful. I subsetted the data using lines of codes to include only the g…

Comment: [DiffBind] Obtaining normalization factors by Henry ▴ 10

I see, thank you for your suggestion! I managed to use a separate RLE normalization to obtain the size factors.

Answer: Memory errors using read.bismark? by Peter Hickey ▴ 690

Thanks for sharing an example file. This is a very large non-CpG methylation dataset, which are tricky to work with for a number of reason…

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Comment: [DiffBind] Obtaining normalization factors

Answer: ComplexHeatmap: add pch to rowAnnotation when the input is a data frame with var

Comment: Not fully paired differential gene expression analysis

Answer: GSVA error

Comment: DESeq2 - Plot Nr. Genes vs Variance explained in PCA

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