Bioconductor Log2FC

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deseq2 differential gene expression log2fc

8.1 years ago Osvaldo ▴ 40

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5.7k

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limma pvalue log2fc log2

updated 17 months ago by James W. MacDonald 65k • written 8.1 years ago by serpalma.v ▴ 60

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5.2k

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deseq2 L2FC log2fc

updated 6.7 years ago by Michael Love 41k • written 6.7 years ago by sup230 ▴ 30

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4.2k

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DESeq2 log2FC

19 months ago User000 • 0

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3.8k

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deseq2 log2fc

updated 7.5 years ago by Michael Love 41k • written 7.5 years ago by David R ▴ 90

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2.3k

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edger log2FC

written 4.5 years ago by matteo.buti • 0

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2.3k

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deseq2 R log2fc

updated 8.4 years ago by Michael Love 41k • written 8.4 years ago by Sushant Pawar • 0

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1.9k

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deseq2 chipseq counts log2fc error

updated 7.9 years ago by Michael Love 41k • written 7.9 years ago by robin.uchiyama • 0

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1.8k

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scan Log2FC

updated 8.8 years ago by Gordon Smyth 50k • written 8.8 years ago by Vani ▴ 20

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1.3k

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deseq2 log2fc shrinkage

updated 6.4 years ago by Michael Love 41k • written 6.4 years ago by aec ▴ 90

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1.3k

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log2FC DESeq2 GSEA voom limma

updated 21 months ago by Gordon Smyth 50k • written 21 months ago by Yang Shi ▴ 10

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1.3k

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deseq2 log2fc standard error timecourse

updated 6.2 years ago by ellascottgm • 0 • written 6.2 years ago by Verena • 0

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1.2k

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DESeq2 Log2FC RNASeqData

15 months ago Iwan • 0

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672

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DESeq2 LRT multifactorial up/down-reg log2FC

updated 16 months ago by James W. MacDonald 65k • written 16 months ago by Laia ▴ 10

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612

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DESeq2 SingleCell log2FC

12 months ago paria.alipour • 0

15 results • Page 1 of 1

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Comment: Reproducibility issue with scran together with lapply and BiocParallel by ATpoint ★ 4.0k

Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…

Answer: Reproducibility issue with scran together with lapply and BiocParallel by Aaron Lun ★ 28k

IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…

Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0

I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…

Votes

C: null model and DEXSeqDataSet object in DEXSEQ

A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?

A: How to explain how DESeq2 works to someone with zero bioinformatics background?

Answer: Interpret plot from DiffBind

Answer: How to retrieve gene ontology GO class from gene list?

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Supporter to JKim • 0