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problem loading lumi package, Error : object ‘sqliteQuickSQL’ is not exported by 'namespace:RSQLite'
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Recent ...
Replies
Answer: Differentially expressed genes in monocle pseudotime
by
Gordon Smyth
50k
You might try the methods in this paper:
Cheng J, Smyth GK*, Chen Y* (2023). Unraveling the timeline of gene expression: A pseudotempora…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
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Seyram M.
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Thank you Michael for your attention to my question. I am truly grateful.
I subsetted the data using lines of codes to include only the g…
Comment: [DiffBind] Obtaining normalization factors
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Henry
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I see, thank you for your suggestion! I managed to use a separate RLE normalization to obtain the size factors.
Answer: Memory errors using read.bismark?
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Thanks for sharing an example file.
This is a very large non-CpG methylation dataset, which are tricky to work with for a number of reason…
Comment: Reading huge bismark coverage files using bbseq::read.bismark
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Superficially, your issue is similar to [https://github.com/hansenlab/bsseq/issues/136](https://github.com/hansenlab/bsseq/issues/136).
You…
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