Showing : Lumi • reset
2
votes
20
replies
10k
views
problem loading lumi package, Error : object ‘sqliteQuickSQL’ is not exported by 'namespace:RSQLite'
lumi
updated 9.0 years ago by • 0 • written 9.5 years ago by ▴ 10
3
votes
12
replies
6.1k
views
packages installation problem
limma Rqc beadarray Lumi
updated 8.2 years ago by ▴ 70 • written 8.2 years ago by • 0
3
votes
9
replies
5.6k
views
Illumina Expression analysis from iDAT files
beadarray lumi illuminaio idat
updated 2.4 years ago by 50k • written 10.4 years ago by 21k
0
votes
2
replies
4.4k
views
Annotate - gene name to ENSEMBL
Microarray GO lumi Microarray GO lumi
updated 10.5 years ago by ▴ 400 • written 10.5 years ago by ▴ 180
0
votes
1
reply
3.9k
views
Problem installing packages on new R
limma beadarray lumi arrayMvout limma beadarray lumi arrayMvout
updated 11.2 years ago by 65k • written 11.2 years ago by ▴ 10
2
votes
8
replies
3.5k
views
Problems importing Illumina raw data with lumi R package
Illumina Human HT-12 v4 lumi limma microarray
updated 8.9 years ago by 50k • written 8.9 years ago by ▴ 830
0
votes
0
replies
3.2k
views
lumi export
lumi lumi
14.5 years ago Mervi Alanne ▴ 70
1
vote
10
replies
3.0k
views
minfi, lumi, methylumi, DMRcate installation error
minfi lumi methylumi dmrcate illuminahumanmethylation450kanno.ilmn12.hg19
updated 7.1 years ago by ▴ 170 • written 7.1 years ago by ▴ 10
0
votes
4
replies
2.9k
views
Error : package slot missing from signature for generic
Biobase lumi oligoClasses Biobase lumi oligoClasses
11.7 years ago Mark Cowley ▴ 910
0
votes
4
replies
2.8k
views
Illumina ID Mapping library
lumi illumina beadarray microarray
8.2 years ago kritikamish99 ▴ 10
2
votes
4
replies
2.6k
views
Problem in installing Bioconductor packages due to "IRanges"
lumi methylumi methyAnalysis
6.3 years ago topijush ▴ 10
2
votes
7
replies
2.6k
views
Removing samples from S4 object (in lumi)
lumi S4
9.1 years ago Chi Hong • 0
0
votes
16
replies
2.6k
views
About GEO submission of Illumina data by lumi
lumi lumi
updated 15.2 years ago by ★ 1.2k • written 15.2 years ago by ▴ 640
0
votes
2
replies
2.5k
views
No methods found in package ‘RSQLite’ for request: ‘dbListFields’ when loading ‘lumi’
RSQLite lumi
3.4 years ago Rohmatul • 0
0
votes
0
replies
2.4k
views
lumiR error Error in gregexpr("\t", dataLine1)[[1]] : subscript out of bounds
lumi illumina normalization beadarray
7.0 years ago hkarakurt ▴ 20
1
vote
3
replies
2.4k
views
Reading Illumina HT12 V4.0 Data from GEO into Lumi
lumi geoquery geo illumina human ht-12 v4 gene expression
updated 6.5 years ago by 50k • written 6.5 years ago by • 0
0
votes
1
reply
2.3k
views
Estimating fold change from limma 'log2FC' using lumi
Microarray Normalization limma lumi Microarray Normalization limma lumi
updated 12.2 years ago by ▴ 30 • written 12.2 years ago by 50k
2
votes
5
replies
2.3k
views
Errors in Processing GSE36411_non-normalized.txt file of Illumina data using lumi Package and limma package
limma lumi illumina gene expression data
updated 2.3 years ago by ▴ 10 • written 5.8 years ago by • 0
0
votes
2
replies
2.2k
views
unable to install lumi package
lumi BiocInstaller lumi BiocInstaller
updated 12.5 years ago by 65k • written 12.5 years ago by ▴ 360
0
votes
10
replies
2.2k
views
MethyLumiM to MethyLumiSet?
convert lumi methylumi minfi wateRmelon convert lumi methylumi minfi wateRmelon
updated 10.5 years ago by ★ 4.2k • written 10.5 years ago by ▴ 190
1
vote
2
replies
2.1k
views
unable to find Lumi package in R
lumi
updated 8.1 years ago by ★ 13k • written 8.1 years ago by • 0
0
votes
1
reply
2.1k
views
Control probe QC plots for Infinium 450k chips (lumi, minfi...)
Annotation probe lumi minfi Annotation probe lumi minfi
updated 10.7 years ago by ★ 4.2k • written 10.7 years ago by ▴ 90
0
votes
3
replies
2.0k
views
problems installing lumi
lumi lumi
updated 11.6 years ago by ▴ 440 • written 11.6 years ago by ▴ 110
1
vote
2
replies
2.0k
views
Further analysis of methylation microarrays data (Illumina - idat) after reading by illuminaio package
limma lumi illuminaio illimina 450k methylation microarray
8.0 years ago Adam • 0
0
votes
5
replies
2.0k
views
Coercion lumi/minfi objects
lumi minfi lumi minfi
updated 10.2 years ago by ★ 4.2k • written 10.2 years ago by ▴ 10
2
votes
2
replies
2.0k
views
Lumi - Can't write to pData Slot
lumi
updated 8.8 years ago by 25k • written 8.8 years ago by ▴ 370
0
votes
7
replies
1.9k
views
analyzing HumanHT12 with lumi
Microarray Normalization probe lumi Microarray Normalization probe lumi
updated 14.6 years ago by ▴ 50 • written 14.6 years ago by ▴ 30
0
votes
0
replies
1.9k
views
how to use MethyLumiM object in BMIQ(wateRmelon)
lumi methylumi lumi methylumi
11.0 years ago Guest User ★ 13k
1
vote
6
replies
1.9k
views
minfi and lumi not available for version 3.3.2
minfi lumi
updated 7.2 years ago by 25k • written 7.2 years ago by ▴ 10
0
votes
7
replies
1.8k
views
Illumina annotation packages discrepancy
Annotation illuminaHumanv2 probe lumi Annotation illuminaHumanv2 probe lumi
updated 15.4 years ago by ▴ 280 • written 15.4 years ago by ★ 1.2k
0
votes
2
replies
1.8k
views
lumi annotation using nuID, missing gene symbols
Annotation probe annotate lumi Annotation probe annotate lumi
updated 14.0 years ago by ★ 7.2k • written 14.0 years ago by ▴ 170
0
votes
1
reply
1.8k
views
Possible issue with detection p-values in Lumi package
probe limma lumi probe limma lumi
updated 13.3 years ago by ★ 3.6k • written 13.3 years ago by ▴ 10
0
votes
2
replies
1.8k
views
Reading Illumina data from GenomeStudio in limma
probe lumi probe lumi
updated 10.7 years ago by ★ 3.6k • written 10.7 years ago by ★ 13k
1
vote
3
replies
1.8k
views
lumiR.batch fails after upgrade to R v3.2.0 and lumi v2.20.0
lumi
9.0 years ago Jeremy Martinson • 0
0
votes
1
reply
1.8k
views
how to set up sampleInfo for methylation array in illumina 450K
lumi lumi
updated 10.0 years ago by ▴ 440 • written 10.0 years ago by ★ 13k
0
votes
2
replies
1.8k
views
arrayQualityMetrics and lumi - failure to load in R2.15.1 windows
lumi arrayQualityMetrics lumi arrayQualityMetrics
updated 11.4 years ago by ★ 13k • written 11.4 years ago by ▴ 480
1
vote
4
replies
1.8k
views
Trouble loading 'lumi' package
lumi illumina hdf5array
updated 5.7 years ago by 65k • written 5.7 years ago by ▴ 30
4
votes
5
replies
1.8k
views
Can't install 'lumi'
lumi
updated 7.4 years ago by 25k • written 7.5 years ago by ▴ 10
1
vote
1
reply
1.8k
views
Coercion of MethyLumiSet to MethyLumiR changes raw methylation values?
Normalization probe lumi Normalization probe lumi
updated 9.2 years ago by • 0 • written 10.1 years ago by ▴ 20
0
votes
0
replies
1.8k
views
reading with lumi
Preprocessing PROcess lumi methylumi Preprocessing PROcess lumi methylumi
12.1 years ago Tim Triche ★ 4.2k
0
votes
0
replies
1.8k
views
Illumina Expression analysis from iDAT files
Normalization limma beadarray lumi illuminaio Normalization limma beadarray lumi
10.4 years ago Kasper Daniel Hansen ★ 6.5k
1
vote
4
replies
1.7k
views
download data from GEO Illumina platform
lumi illumina human ht-12 v4
updated 5.4 years ago by ▴ 50 • written 5.4 years ago by • 0
0
votes
1
reply
1.7k
views
Modeling of methylation status using lumi
Microarray lumi BRAIN Microarray lumi BRAIN
updated 13.1 years ago by ▴ 80 • written 13.1 years ago by ▴ 620
0
votes
3
replies
1.7k
views
mifi unable to install by bioLite
lumi lumi
updated 10.5 years ago by ★ 4.2k • written 10.5 years ago by ▴ 30
0
votes
1
reply
1.7k
views
Adding Phenodata after processing in Lumi
PROcess lumi PROcess lumi
updated 9.1 years ago by • 0 • written 12.7 years ago by ▴ 10
0
votes
0
replies
1.7k
views
Error in the Illumina ID to Gene Symbol mapping through lumi package
lumi illuminahumanv3 lumihumanidmapping
8.7 years ago gokcen.eraslan ▴ 10
0
votes
0
replies
1.6k
views
Illumina - Beadarray - Limma
Microarray Normalization limma PROcess lumi Microarray Normalization limma PROcess lumi
17.1 years ago Simon Lin ▴ 270
0
votes
5
replies
1.6k
views
problems installing lumi
lumi lumi
updated 13.1 years ago by ★ 8.2k • written 13.1 years ago by ▴ 620
2
votes
4
replies
1.6k
views
read bead-level data directly by lumi
bead-level GEO lumi
updated 8.1 years ago by ★ 6.5k • written 8.1 years ago by • 0
0
votes
6
replies
1.5k
views
Illumina data and GO2heatmap
Annotation lumi Annotation lumi
updated 13.8 years ago by ▴ 480 • written 13.9 years ago by ▴ 70
50 results • Page 1 of 1
Recent ...
Replies
Answer: FilterByExpr low counts with small sample size by Gordon Smyth 50k
It doesn't seem to me that there is necessarily any problem with the analysis. You that there are "too many low-reads" but actually there …
Answer: How to make DGEList and design matrix by edgeR package by Gordon Smyth 50k
Your question is curious because you showed code that made a DGEList and design matrix in your previous post just 15 hours ago. Please h…
Answer: Finding DEGs by using edgeR by Gordon Smyth 50k
I am not clear what you mean that you have already normalized your data. How exactly did you normalize the data? The best way to do an edg…
Answer: Log-cpm values from limma by Gordon Smyth 50k
The log-cpm values from voom() are not free of batch effect. If you want batch-corrected log-cpm values, we recommend cpm() followed by rem…
Comment: Differential peaks that were not identified in diffbind were identified in diseq by ATpoint ★ 4.0k
As expected normalization is **way** off, meaning in simple terms that the cloud is too high. The deep-blue area should be along y=0. Try t…
Votes
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
Awards • All
Popular Question to Gordon Smyth 50k
Scholar to Peter Hickey ▴ 740
Popular Question to sropri • 0
Popular Question to W. Evan Johnson ▴ 850
Popular Question to Alejandro Reyes ★ 1.9k
Locations • All
WEHI, Melbourne, Australia, 3 minutes ago
France/Marseille/Inserm, 8 minutes ago
France, 19 minutes ago
Spain, 23 minutes ago
Belgium, 37 minutes ago
Traffic: 821 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6