Bioconductor M1

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RStudio R M1 BiocParallel Mac

updated 21 months ago by Christian Mertes • 0 • written 23 months ago by me.achleitner • 0

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DESeq2 m1 macbook genefilter

3.2 years ago • updated 23 months ago soda ▴ 80

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apple m1 installation silicon

updated 2.8 years ago by Gordon Smyth 51k • written 3.3 years ago by Brian ▴ 90

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Comment: How to conduct maSigPro analysis with only one condition? by James W. MacDonald 67k

Technically it's fitting an analysis of deviance (ANODEV) test, but the principle is the same - deviance, like the likelihood, measures goo…

Comment: How to conduct maSigPro analysis with only one condition? by James W. MacDonald 67k

Yeah, it's fine. What `maSigPro` does in this case is to reformulate the data. Your design has columns that are not useful, and `maSigPro` …

Answer: Unable to install any Bioconductor package with new R 4.4.1 - path nor writable by James W. MacDonald 67k

You have installed the packages you wanted: ``` package BiocVersion successfully unpacked and MD5 sums checked package LEA success…

Comment: QSEA- Extraction of Normalized methylation across the samples by celiaruby127 • 0

If you need specific counts for defined regions or windows, you may want to explore other functions or slots within the QSEA object that co…

Comment: How to conduct maSigPro analysis with only one condition? by Jay • 0

Yes, you are right! Great thanks! BTW, according to your working experience on maSigPro, do you think it is suitable for differential analy…

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Comment: dmpFinder for other objects

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Scholar to James W. MacDonald 67k