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Showing :
MAplot
•
reset
10
votes
8
replies
2.0k
views
MA plot
MAplot
14 months ago
Nathalie
▴ 20
3
votes
6
replies
1.8k
views
Clarification MAplot and FDR in EdgeR
edgeR
MAplot
rnaseq
differential gene expression
updated 7.6 years ago by
Gordon Smyth
50k • written 7.6 years ago by
joseph.bergenstrahle
• 0
5
votes
8
replies
1.2k
views
High normalized counts on DESeq2 MAplot
deseq2
maplot
updated 5.4 years ago by
James W. MacDonald
65k • written 5.4 years ago by
rbronste
▴ 60
1
vote
2
replies
1.2k
views
DiffBind DESeq2 MA plot skewed
diffbind
deseq2
maplot
updated 6.5 years ago by
Rory Stark
★ 5.1k • written 6.5 years ago by
rbronste
▴ 60
0
votes
3
replies
2.6k
views
DESeq2 MA plot look different
deseq2
maplot
updated 6.5 years ago by
Michael Love
41k • written 6.5 years ago by
jshouse
▴ 10
2
votes
4
replies
1.5k
views
DiffBind MA plot
diffbind
maplot
updated 6.2 years ago by
Rory Stark
★ 5.1k • written 6.2 years ago by
grundelphine
• 0
2
votes
1
reply
2.0k
views
Error in DESeq2 plotMA from object subset
deseq2
maplot
subset
updated 6.2 years ago by
Michael Love
41k • written 6.2 years ago by
rbronste
▴ 60
0
votes
1
reply
1.5k
views
MA plot interpretation .
MAPLOT
DESEQ2
RNASEQ
updated 6.1 years ago by
Michael Love
41k • written 6.1 years ago by
phurbusang
• 0
0
votes
4
replies
1.1k
views
DESeq2 MA plot normalisation Issue
deseq2
normalization
maplot
rnaseq
updated 5.4 years ago by
Michael Love
41k • written 5.4 years ago by
ma619
• 0
0
votes
2
replies
1.3k
views
MA plot scattering pattern
deseq2
MAplot
5.3 years ago
avitalwasser
• 0
2
votes
2
replies
2.5k
views
DiffBind's MA plots for ChIP-seq - how to properly interpret normalization from them?
diffbind
R
MAplot
Chipseq
updated 4.8 years ago by
Rory Stark
★ 5.1k • written 4.8 years ago by
melnuesch
▴ 10
1
vote
2
replies
572
views
Label points on DESeq2 MA plot with interval list
deseq2
maplot
annotation
updated 4.4 years ago by
Michael Love
41k • written 4.4 years ago by
rbronste
▴ 60
1
vote
1
reply
755
views
LFCshrink function understanding
deseq2
MAplot
lfcshrink
updated 3.6 years ago by
Michael Love
41k • written 3.6 years ago by
evelas13
• 0
0
votes
3
replies
2.1k
views
Understanding MA plot distortion
DESeq2
MAplot
deseq
updated 3.1 years ago by
Michael Love
41k • written 3.1 years ago by
sp
• 0
0
votes
2
replies
878
views
Why is my log fold change not centered around 0 and lower?
DESeq2
MAplot
updated 13 months ago by
ATpoint
★ 4.0k • written 13 months ago by
Michael
• 0
0
votes
0
replies
1.2k
views
error while running MAplot
MAplot
rnaseq
cummerbund
8.0 years ago
kritikamish99
▴ 10
16 results • Page
1 of 1
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Replies
Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
by
Michael Love
41k
Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Votes
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
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