Showing : MAplot • reset
3
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6
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1.2k
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Clarification MAplot and FDR in EdgeR
edgeR MAplot rnaseq differential gene expression
updated 5.8 years ago by 45k • written 5.8 years ago by • 0
5
votes
8
replies
639
views
High normalized counts on DESeq2 MAplot
deseq2 maplot
updated 3.5 years ago by 59k • written 3.5 years ago by ▴ 60
1
vote
2
replies
748
views
DiffBind DESeq2 MA plot skewed
diffbind deseq2 maplot
updated 4.6 years ago by ★ 4.4k • written 4.6 years ago by ▴ 60
2
votes
1
reply
1.2k
views
Error in DESeq2 plotMA from object subset
deseq2 maplot subset
updated 4.3 years ago by 36k • written 4.3 years ago by ▴ 60
0
votes
1
reply
1.0k
views
MA plot interpretation .
MAPLOT DESEQ2 RNASEQ
updated 4.3 years ago by 36k • written 4.3 years ago by • 0
0
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3
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579
views
Understanding MA plot distortion
DESeq2 MAplot deseq
updated 14 months ago by 36k • written 14 months ago by • 0
0
votes
3
replies
1.6k
views
DESeq2 MA plot look different
deseq2 maplot
updated 4.6 years ago by 36k • written 4.6 years ago by ▴ 10
2
votes
4
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734
views
DiffBind MA plot
diffbind maplot
updated 4.3 years ago by ★ 4.4k • written 4.3 years ago by • 0
0
votes
4
replies
489
views
DESeq2 MA plot normalisation Issue
deseq2 normalization maplot rnaseq
updated 3.5 years ago by 36k • written 3.6 years ago by • 0
0
votes
2
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745
views
MA plot scattering pattern
deseq2 MAplot
3.5 years ago avitalwasser • 0
2
votes
2
replies
1.2k
views
DiffBind's MA plots for ChIP-seq - how to properly interpret normalization from them?
diffbind R MAplot Chipseq
updated 3.0 years ago by ★ 4.4k • written 3.0 years ago by ▴ 10
1
vote
2
replies
258
views
Label points on DESeq2 MA plot with interval list
deseq2 maplot annotation
updated 2.5 years ago by 36k • written 2.5 years ago by ▴ 60
1
vote
1
reply
245
views
LFCshrink function understanding
deseq2 MAplot lfcshrink
updated 20 months ago by 36k • written 20 months ago by • 0
0
votes
0
replies
736
views
error while running MAplot
MAplot rnaseq cummerbund
6.1 years ago kritikamish99 ▴ 10
14 results • Page 1 of 1
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Comment: featureCounts: 0% successfully assigned fragments by KMS • 0
Dear ATpoint I am exactly looking for read/gene count from BAM/SAM file either through ht-seq or feature count feature count giving me 0% s…
Answer: Get MANE transcripts from TxDb.Hsapiens.UCSC.hg38.knownGene by James W. MacDonald 59k
There is the ncbiRefSeqSelect table that has the MANE and RefSeq Select transcripts. It's not just the MANE though. ``` > z <- makeTxDb…
Comment: Handling of missing values in limma by AyHi • 0
Thank you, Gordon, for your reply. I used sum(is.na(lmfit)) after lmFit, but somewhat it indicated there was no NA observations even when…
Comment: merging VCF files by lesefo6448 • 0
You can use this VCF Merger Software if you want to Merge VCF files into one file. this Software easily Merge your multiple VCF files with…
Comment: featureCounts: 0% successfully assigned fragments by ATpoint ★ 1.2k
What you have to do is to check whether the chromosome names in the BAM file are part of the GTF. Do it programatically, not by eye. Extrac…
Votes
Answer: Load packages when using BatchtoolsParam
Comment: Load packages when using BatchtoolsParam
Answer: edgeR: the F-statistics changed after removing lowly expressed gene
Answer: edgeR: the F-statistics changed after removing lowly expressed gene
A: DESeq2: thousands of NA for pvalues?
Awards • All
Scholar to James W. MacDonald 59k
Popular Question to Gyan Prakash Mishra • 0
Scholar to ATpoint ★ 1.2k
Teacher to Gordon Smyth 45k
Scholar to Matthew McCormack ▴ 180
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