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Comment: DESeq filtering specific to contrasts
by
Carlin95
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0
Fair enough, I guess it depends on the comparison being made, right? If one was interested in a feature comparing Timepoint A vs B, then it…
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Dev
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Sir but when I put in the expression data via the csv file, it was showing the gene names then but now when i set it in the form factor it …
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```
> library(AnnotationHub)
> hub <- AnnotationHub()
|===========================| 100%
snapshotDate(): 2023-10-23
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Comment: Which input file is used for DGEList in EgdeR?
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i.atanasoai
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Understood, Thank you very much for the reply, very kind.
Comment: Which input file is used for DGEList in EgdeR?
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"gene_counts_length_scaled.tsv file generated by the nf-core be exactly that?"
No that is the counts scaled by the length. Counts + offset…
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