Bioconductor MAplot

Showing : MAplot • reset

votes

replies

2.7k

views

deseq2 maplot

updated 6.5 years ago by Michael Love 41k • written 6.5 years ago by jshouse ▴ 10

votes

replies

2.5k

views

diffbind R MAplot Chipseq

updated 4.9 years ago by Rory Stark ★ 5.1k • written 4.9 years ago by melnuesch ▴ 10

votes

replies

2.2k

views

DESeq2 MAplot deseq

updated 3.1 years ago by Michael Love 41k • written 3.1 years ago by sp • 0

votes

replies

2.0k

views

MAplot

14 months ago Nathalie ▴ 20

votes

2.0k

views

deseq2 maplot subset

updated 6.2 years ago by Michael Love 41k • written 6.2 years ago by rbronste ▴ 60

votes

replies

1.8k

views

edgeR MAplot rnaseq differential gene expression

updated 7.7 years ago by Gordon Smyth 50k • written 7.7 years ago by joseph.bergenstrahle • 0

votes

replies

1.5k

views

diffbind maplot

updated 6.2 years ago by Rory Stark ★ 5.1k • written 6.2 years ago by grundelphine • 0

votes

1.5k

views

MAPLOT DESEQ2 RNASEQ

updated 6.2 years ago by Michael Love 41k • written 6.2 years ago by phurbusang • 0

votes

replies

1.3k

views

deseq2 MAplot

5.4 years ago avitalwasser • 0

votes

replies

1.2k

views

deseq2 maplot

updated 5.4 years ago by James W. MacDonald 65k • written 5.4 years ago by rbronste ▴ 60

vote

replies

1.2k

views

diffbind deseq2 maplot

updated 6.5 years ago by Rory Stark ★ 5.1k • written 6.5 years ago by rbronste ▴ 60

votes

replies

1.2k

views

MAplot rnaseq cummerbund

8.0 years ago kritikamish99 ▴ 10

votes

replies

1.1k

views

deseq2 normalization maplot rnaseq

updated 5.5 years ago by Michael Love 41k • written 5.5 years ago by ma619 • 0

votes

replies

935

views

DESeq2 MAplot

updated 14 months ago by ATpoint ★ 4.0k • written 14 months ago by Michael • 0

vote

767

views

deseq2 MAplot lfcshrink

updated 3.6 years ago by Michael Love 41k • written 3.6 years ago by evelas13 • 0

vote

replies

582

views

deseq2 maplot annotation

updated 4.4 years ago by Michael Love 41k • written 4.4 years ago by rbronste ▴ 60

16 results • Page 1 of 1

Recent ...

Replies

Comment: Error in champ.load(): The following specified files do not exist by Basti ▴ 760

The error stems from the Basename column, please see solution here : https://support.bioconductor.org/p/p132482/

Comment: FilterByExpr low counts with small sample size by Gordon Smyth 50k

As always, it helps to see code. Are you running `voom` or `voomLmFit`? Did you run `normLibSizes()` in edgeR prior to `voom`? Are you star…

Comment: Batch correction and repeated measures by Gordon Smyth 50k

In your code, it was clear that `expr.mat` was a matrix rather than a DGEList, so it has to be a count matrix. If you have a DGEList object…

Comment: Methylation Analysis experiment design using Limma by Gordon Smyth 50k

I don't analyse methylation arrays so cannot advise on specific limma settings for that type of data. Please follow the advice of the methy…

Comment: Light difference when using coef vs omit a group when compare 3 groups. by Chris • 0

Hi Gordon, thank you so much for further guidance! I discussed this issue with psychology doctor who treat Alzheimer patients and they don'…

Votes

Answer: How many of my genes from my gene list are in each KEGG pathway?

Comment: Light difference when using coef vs omit a group when compare 3 groups.

DESeq2 variance transformation error and plot dispersion Estimate

A: DESeq2 variance transformation error and plot dispersion Estimate

ensembl to hgnc symbols creates duplicates

Awards • All