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Answer: Trouble with detecting AS events using ASpediaFI
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rbqlsrbqls56
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0
Assuming you downloaded "Homo_sapiens.GRCh38.104.gtf" from the Ensembl website, the gene model contains reference chromosomes (chr1-22, X, …
Answer: edgeR : results from goana and kegga functions show opposite sig. p-value
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James W. MacDonald
59k
It is not a valid assumption that a GO term and a KEGG term that appear to be the same are actually the same.
```
> library(org.Hs.eg.d…
Comment: help please！
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shepherl
3.1k
what is the result of `.libPaths()` and `"AnnotationDbi" %in% rownames(installed.packages())`
Comment: DEXSeq: samples$sample_id %in% colnames(counts) is not TRUE
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jeroen.gilis
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30
Hi phoebe1354,
Sorry for the late reply, will try to follow it up now (if still relevant).
Could you just give me `head(rownames(cts))` an…
Comment: DiffBind always reverts to default normalization
by
bers.anthrope
•
0
Thanks a lot, everything works now!
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