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MDS
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11
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15
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2.7k
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edgeR - MDS Plot for Count Data
edger
DEG
mds
plot
6.7 years ago • updated 6.6 years ago
baus87
• 0
4
votes
3
replies
2.6k
views
Saving MDS scores
MDS
edger
updated 8.3 years ago by
Gordon Smyth
50k • written 9.4 years ago by
tobler
• 0
2
votes
8
replies
3.7k
views
MDS Plot help in edgeR
edgeR
plotmds
differential gene expression
MDS
mdsplot
updated 5.3 years ago by
Gordon Smyth
50k • written 5.3 years ago by
ilovesuperheroes1993
• 0
2
votes
2
replies
953
views
How to deal with stronger effect by donor than treatment
MDS
RNA-Seq
updated 21 months ago by
Gordon Smyth
50k • written 21 months ago by
Pei
• 0
2
votes
2
replies
1.2k
views
Make samples symbols bigger in PCA / MDS analysis with plotMDS function
plotMDS
PCA
RNASeq
MDS
updated 2.1 years ago by
Gordon Smyth
50k • written 2.1 years ago by
Raito92
▴ 60
1
vote
1
reply
1.5k
views
How to inteprate distances calculated by cmdscale?
differential gene expression
cmdscale
mds
8.0 years ago
Adam
• 0
0
votes
2
replies
1.4k
views
should i include PCs or MDSs as covariates in methylation study?
limma
methylation
R
covariate
MDS
updated 7.0 years ago by
Aaron Lun
★ 28k • written 7.0 years ago by
RC
• 0
0
votes
0
replies
1.2k
views
ChAMP MDS 1000 most variable positions
champ
MDS
8.3 years ago
Eric Smith
• 0
8 results • Page
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Comment: DESeq filtering specific to contrasts
by
Carlin95
• 0
Fair enough, I guess it depends on the comparison being made, right? If one was interested in a feature comparing Timepoint A vs B, then it…
Comment: DESeq2 setting significant p-value
by
Dev
• 0
Sir but when I put in the expression data via the csv file, it was showing the gene names then but now when i set it in the form factor it …
Answer: OrgDb for maize
by
James W. MacDonald
65k
``` > library(AnnotationHub) > hub <- AnnotationHub() |===========================| 100% snapshotDate(): 2023-10-23 > query(hu…
Comment: Which input file is used for DGEList in EgdeR?
by
i.atanasoai
• 0
Understood, Thank you very much for the reply, very kind.
Comment: Which input file is used for DGEList in EgdeR?
by
Michael Love
41k
"gene_counts_length_scaled.tsv file generated by the nf-core be exactly that?" No that is the counts scaled by the length. Counts + offset…
Votes
Install/Switch between multiple versions of R, Rstudio, and Bioconductor
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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