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MEDIP-seq
•
reset
0
votes
0
replies
498
views
How to use MeDIPS with BEDPE format input?
R
medip-seq
MEDIPS
13 months ago
Luomeng
• 0
7
votes
9
replies
1.6k
views
QSEA : Internal CNV analysis and cancer type-specific TCGA 450K Human Methylation Calibration Dataset
MEDIP-seq
CNV
TCGA450KHumanMethylationCalibrationDataset
qsea
PRAD
2.9 years ago • updated 2.8 years ago
rtrivedi1
▴ 10
4
votes
5
replies
1.2k
views
Extracting normalized counts in MEDIPS
MEDIPS
MeDIP-seq
updated 2.5 years ago by
Lukas
▴ 20 • written 4.4 years ago by
lshepard
▴ 40
0
votes
0
replies
751
views
Calculating short read coverage at genome wide windows for create.set- MEDIPS
medip-seq
createset
updated 5.2 years ago by
Bioconductor Community
0 • written 5.3 years ago by
oussama.badad
• 0
1
vote
2
replies
938
views
Comparing more than 2 experimental groups with MEDIPS?
medips
medip-seq
dna methylation
dmr analysis
updated 5.3 years ago by
Lukas Chavez
▴ 570 • written 5.3 years ago by
mtefit
• 0
0
votes
0
replies
796
views
All fragments/sequences captured using MeDIP are methylated?
medip-seq
methylation
CpGs
5.4 years ago
saripalligautam86
▴ 10
1
vote
6
replies
1.8k
views
MEDIP: Problem with MEDIPS.createSet
medips
bsgenome
medip-seq
updated 6.0 years ago by
Lukas Chavez
▴ 570 • written 6.0 years ago by
vjain
• 0
16
votes
9
replies
6.4k
views
Diffbind: edgeR or DESeq2 ?
diffbind
medip-seq
edger
deseq2
updated 6.4 years ago by
Rory Stark
★ 5.1k • written 8.0 years ago by
florian.noack
▴ 60
0
votes
6
replies
1.9k
views
MeDIPS: warning when using "ttest" settings in MEDIPS.meth
R
medips
medip-seq
7.6 years ago • updated 6.8 years ago
stb
• 0
3
votes
5
replies
1.6k
views
CNV parameter not working - MEDIPS
medips
medip-seq
error
lukas
updated 6.9 years ago by
Matthias Lienhard
▴ 240 • written 6.9 years ago by
anupriyaverma1408
• 0
1
vote
1
reply
1.2k
views
Window size for MEDIPS
medips
medip-seq
peak finding
luckas
updated 6.9 years ago by
Lukas Chavez
▴ 570 • written 6.9 years ago by
anupriyaverma1408
• 0
0
votes
1
reply
1.1k
views
Insertion size when using 'paired' in MEDIPS.createSet()
medips
R
medip-seq
pair-end reads
updated 7.3 years ago by
Lukas Chavez
▴ 570 • written 7.3 years ago by
stb
• 0
0
votes
1
reply
1.0k
views
How does the 'paired' argument works in MeDIPS 1.23.2
medips
medip-seq
R
pair-end reads
updated 7.5 years ago by
Lukas Chavez
▴ 570 • written 7.5 years ago by
stb
• 0
1
vote
1
reply
1.5k
views
MeDIPS and use of the 'bwa' parameter
R
medip-seq
medips
bwa
updated 7.6 years ago by
Lukas Chavez
▴ 570 • written 7.6 years ago by
stb
• 0
0
votes
0
replies
1.3k
views
count overlapping reads for CpG islands and annotate with gene names?
annotation
chippeakanno
rattus norvegicus
medip-seq
8.1 years ago
Vang Le
▴ 80
15 results • Page
1 of 1
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Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
by
Michael Love
41k
Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
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This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
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Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Votes
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
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