Bioconductor MEDIP-seq

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517

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R medip-seq MEDIPS

14 months ago Luomeng • 0

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1.6k

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MEDIP-seq CNV TCGA450KHumanMethylationCalibrationDataset qsea PRAD

2.9 years ago rtrivedi1 ▴ 10

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1.3k

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MEDIPS MeDIP-seq

updated 2.6 years ago by Lukas ▴ 20 • written 4.4 years ago by lshepard ▴ 40

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758

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medip-seq createset

updated 5.3 years ago by Bioconductor Community 0 • written 5.4 years ago by oussama.badad • 0

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955

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medips medip-seq dna methylation dmr analysis

updated 5.4 years ago by Lukas Chavez ▴ 570 • written 5.4 years ago by mtefit • 0

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807

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medip-seq methylation CpGs

5.4 years ago saripalligautam86 ▴ 10

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1.9k

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medips bsgenome medip-seq

updated 6.1 years ago by Lukas Chavez ▴ 570 • written 6.1 years ago by vjain • 0

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1.6k

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medips medip-seq error lukas

updated 6.9 years ago by Matthias Lienhard ▴ 240 • written 6.9 years ago by anupriyaverma1408 • 0

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1.2k

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medips medip-seq peak finding luckas

updated 6.9 years ago by Lukas Chavez ▴ 570 • written 6.9 years ago by anupriyaverma1408 • 0

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1.1k

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medips R medip-seq pair-end reads

updated 7.4 years ago by Lukas Chavez ▴ 570 • written 7.4 years ago by stb • 0

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1.1k

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medips medip-seq R pair-end reads

updated 7.6 years ago by Lukas Chavez ▴ 570 • written 7.6 years ago by stb • 0

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1.9k

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R medips medip-seq

7.7 years ago • updated 6.8 years ago stb • 0

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1.5k

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R medip-seq medips bwa

updated 7.7 years ago by Lukas Chavez ▴ 570 • written 7.7 years ago by stb • 0

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6.5k

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diffbind medip-seq edger deseq2

updated 6.5 years ago by Rory Stark ★ 5.1k • written 8.1 years ago by florian.noack ▴ 60

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1.3k

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annotation chippeakanno rattus norvegicus medip-seq

8.2 years ago Vang Le ▴ 80

15 results • Page 1 of 1

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Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0

Thank you!

Comment: FGSEA pre-ranked input in increasing order or decreasing by alserg ▴ 240

They are reorder in the decreasing order.

Comment: significant difference of p-values with dream() after updating VariancePartition by Le • 0

Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…

Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs by sredemption • 0

Try library(enrichplot) dotplot(gsea_FS, showCategory=10, split=".sign") + facet_grid(.~.sign)

Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0

Thank you for your reply and I know there is another post similar to this you had mentioned this. How are the genes that I mentioned in the…

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How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

Comment: DEXSeq DEXSeqDataSet count matrix duplication

Comment: Error in champ.load(): The following specified files do not exist

Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos

Using GRanges and IRanges to simply get all chromosome data

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