Bioconductor MEDIP-seq

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MEDIP-seq CNV TCGA450KHumanMethylationCalibrationDataset qsea PRAD

2.9 years ago rtrivedi1 ▴ 10

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6.5k

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diffbind medip-seq edger deseq2

updated 6.5 years ago by Rory Stark ★ 5.1k • written 8.1 years ago by florian.noack ▴ 60

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1.9k

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medips bsgenome medip-seq

updated 6.1 years ago by Lukas Chavez ▴ 570 • written 6.1 years ago by vjain • 0

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1.9k

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R medips medip-seq

7.7 years ago • updated 6.8 years ago stb • 0

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1.6k

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medips medip-seq error lukas

updated 6.9 years ago by Matthias Lienhard ▴ 240 • written 6.9 years ago by anupriyaverma1408 • 0

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1.3k

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MEDIPS MeDIP-seq

updated 2.6 years ago by Lukas ▴ 20 • written 4.4 years ago by lshepard ▴ 40

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955

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medips medip-seq dna methylation dmr analysis

updated 5.4 years ago by Lukas Chavez ▴ 570 • written 5.4 years ago by mtefit • 0

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1.2k

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medips medip-seq peak finding luckas

updated 6.9 years ago by Lukas Chavez ▴ 570 • written 6.9 years ago by anupriyaverma1408 • 0

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1.5k

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R medip-seq medips bwa

updated 7.7 years ago by Lukas Chavez ▴ 570 • written 7.7 years ago by stb • 0

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1.1k

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medips medip-seq R pair-end reads

updated 7.6 years ago by Lukas Chavez ▴ 570 • written 7.6 years ago by stb • 0

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1.1k

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medips R medip-seq pair-end reads

updated 7.4 years ago by Lukas Chavez ▴ 570 • written 7.4 years ago by stb • 0

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807

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medip-seq methylation CpGs

5.4 years ago saripalligautam86 ▴ 10

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758

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medip-seq createset

updated 5.3 years ago by Bioconductor Community 0 • written 5.4 years ago by oussama.badad • 0

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1.3k

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annotation chippeakanno rattus norvegicus medip-seq

8.1 years ago Vang Le ▴ 80

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516

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R medip-seq MEDIPS

14 months ago Luomeng • 0

15 results • Page 1 of 1

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Comment: Error in champ.load(): The following specified files do not exist by Basti ▴ 760

The error stems from the Basename column, please see solution here : https://support.bioconductor.org/p/p132482/

Comment: FilterByExpr low counts with small sample size by Gordon Smyth 50k

As always, it helps to see code. Are you running `voom` or `voomLmFit`? Did you run `normLibSizes()` in edgeR prior to `voom`? Are you star…

Comment: Batch correction and repeated measures by Gordon Smyth 50k

In your code, it was clear that `expr.mat` was a matrix rather than a DGEList, so it has to be a count matrix. If you have a DGEList object…

Comment: Methylation Analysis experiment design using Limma by Gordon Smyth 50k

I don't analyse methylation arrays so cannot advise on specific limma settings for that type of data. Please follow the advice of the methy…

Comment: Light difference when using coef vs omit a group when compare 3 groups. by Chris • 0

Hi Gordon, thank you so much for further guidance! I discussed this issue with psychology doctor who treat Alzheimer patients and they don'…

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Answer: How many of my genes from my gene list are in each KEGG pathway?

Comment: Light difference when using coef vs omit a group when compare 3 groups.

DESeq2 variance transformation error and plot dispersion Estimate

A: DESeq2 variance transformation error and plot dispersion Estimate

ensembl to hgnc symbols creates duplicates

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