Bioconductor MEDIP-seq

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5.3k

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diffbind medip-seq edger deseq2

updated 5.6 years ago by Rory Stark ★ 4.9k • written 7.2 years ago by florian.noack ▴ 60

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1.5k

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R medips medip-seq

6.8 years ago • updated 6.0 years ago stb • 0

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1.3k

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medips bsgenome medip-seq

updated 5.2 years ago by Lukas Chavez ▴ 570 • written 5.2 years ago by vjain • 0

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1.2k

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medips medip-seq error lukas

updated 6.1 years ago by Matthias Lienhard ▴ 230 • written 6.1 years ago by anupriyaverma1408 • 0

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1.1k

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MEDIP-seq CNV TCGA450KHumanMethylationCalibrationDataset qsea PRAD

2.0 years ago rtrivedi1 ▴ 10

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1.1k

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R medip-seq medips bwa

updated 6.8 years ago by Lukas Chavez ▴ 570 • written 6.8 years ago by stb • 0

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1.0k

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annotation chippeakanno rattus norvegicus medip-seq

7.3 years ago Vang Le ▴ 80

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972

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medips medip-seq peak finding luckas

updated 6.1 years ago by Lukas Chavez ▴ 570 • written 6.1 years ago by anupriyaverma1408 • 0

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848

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MEDIPS MeDIP-seq

updated 20 months ago by Lukas ▴ 20 • written 3.5 years ago by lshepard ▴ 40

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826

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medips R medip-seq pair-end reads

updated 6.5 years ago by Lukas Chavez ▴ 570 • written 6.5 years ago by stb • 0

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813

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medips medip-seq R pair-end reads

updated 6.7 years ago by Lukas Chavez ▴ 570 • written 6.7 years ago by stb • 0

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691

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medips medip-seq dna methylation dmr analysis

updated 4.5 years ago by Lukas Chavez ▴ 570 • written 4.5 years ago by mtefit • 0

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561

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medip-seq createset

updated 4.4 years ago by Bioconductor Community 0 • written 4.5 years ago by oussama.badad • 0

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541

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medip-seq methylation CpGs

4.6 years ago saripalligautam86 ▴ 10

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126

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R medip-seq MEDIPS

3 months ago Luomeng • 0

15 results • Page 1 of 1

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Comment: Use with_go along with other filters in getBM function by RuBBiT0 ▴ 10

Thank you! I think that makes much sense to me.

Comment: Interpret plot from DiffBind by Rory Stark ★ 4.9k

Not necessarily. It look to me like there is reconfiguring going on, with some chromatin that was open in the control becoming closed (the …

Comment: Interpret plot from DiffBind by Chris • 0

Thanks Rory! So that means the diseased sample has chromatin more open then the control one, is that correct?

Answer: List of Deprecated Packages for Bioc3.17 by shepherl 3.5k

lfa and gcatest have been reinstated.

Comment: Remove duplicate genera in DEseq output? by Lluís Revilla Sancho ▴ 710

How is your data before calculating the deg_DESeq? I see you use `phyloseq_to_deseq2` which should work well, but have you double checked t…

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Comment: Interpret plot from DiffBind

Answer: Use with_go along with other filters in getBM function

Answer: Interpret plot from DiffBind

A: Generating a proper TxDb instance from NCBI GFF Annotations File

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