Showing : MEDIPS • reset
0
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3
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7.6k
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Downgrading R to an older version
MEDIPS ChAMP MEDIPS ChAMP
updated 9.7 years ago by ★ 8.2k • written 9.7 years ago by ▴ 70
7
votes
18
replies
2.9k
views
Generation of QSEA TCGA 450K Human Methylation Calibration Dataset
illimina 450k methylation qsea MEDIPS TCGA
updated 3 months ago by ▴ 240 • written 7.0 years ago by ▴ 20
0
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3
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2.8k
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MEDIPS, GRanges, IRanges error processing BAM file
Alignment BSgenome PROcess BSgenome IRanges MEDIPS Alignment BSgenome PROcess BSgenome
updated 10.7 years ago by ▴ 570 • written 10.7 years ago by ▴ 40
0
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9
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2.5k
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MEDIPS: how does MEDIPS define a methylated region / cluster?
Sequencing MEDIPS
updated 9.6 years ago by • 0 • written 9.6 years ago by ★ 13k
2
votes
13
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2.4k
views
Error with MEDIPS.createSet in queryHits
medips createset
8.5 years ago • updated 8.4 years ago Vanilla • 0
1
vote
2
replies
2.2k
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MEDIPS vs MACS: why does MEDIPS generate more conservative p-values
p-value medips MACS
updated 8.9 years ago by ▴ 570 • written 8.9 years ago by • 0
0
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5
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2.1k
views
MEDIPS.createSet error
Alignment BSgenome BSgenome MEDIPS Alignment BSgenome BSgenome MEDIPS
updated 10.1 years ago by ▴ 570 • written 10.1 years ago by ▴ 220
0
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0
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2.1k
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BioStrings for current R: RE: BSgenomeForge seed file - seqnames field
GO Cancer BSgenome OrganismDb SNPlocs TranscriptDb Biostrings BSgenome rtracklayer MEDIPS
10.4 years ago Hervé Pagès 16k
0
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5
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2.1k
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How does MEDIPS handle multiple mapping of a read
MEDIPS MEDIPS
updated 9.7 years ago by ▴ 570 • written 9.7 years ago by ★ 13k
0
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1
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2.0k
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It works! RE: So close, but still error: RE: Rsamtools filtering bam file: RE: MEDIPS.createSet error
Alignment GO Cancer BSgenome BSgenome Rsamtools genomes MEDIPS Alignment GO Cancer
updated 10.0 years ago by ▴ 570 • written 10.1 years ago by ▴ 220
0
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6
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1.9k
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MEDIPS: Number of windows tested in Paired-end data set
medips r
8.0 years ago peter.mcerlean • 0
0
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5
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1.9k
views
Rsamtools filtering bam file: RE: MEDIPS.createSet error
GO BSgenome BSgenome Rsamtools genomes MEDIPS GO BSgenome BSgenome Rsamtools genomes
updated 10.1 years ago by 25k • written 10.1 years ago by ▴ 220
0
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6
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1.9k
views
MeDIPS: warning when using "ttest" settings in MEDIPS.meth
R medips medip-seq
7.7 years ago • updated 6.8 years ago stb • 0
1
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6
replies
1.9k
views
MEDIP: Problem with MEDIPS.createSet
medips bsgenome medip-seq
updated 6.1 years ago by ▴ 570 • written 6.1 years ago by • 0
0
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1
reply
1.8k
views
edgeR: Analyze mini-time-series MeDIP data of pooled DNAs without replicates?
Sequencing edgeR MEDIPS Sequencing edgeR MEDIPS
9.7 years ago Vang Le ▴ 80
0
votes
2
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1.8k
views
[MEDIPS] Error in 1:max_signal_index : argument of length 0 - what does mean?
Preprocessing Regression MEDIPS Preprocessing Regression MEDIPS
updated 10.3 years ago by ▴ 570 • written 10.3 years ago by ▴ 20
0
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1
reply
1.7k
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So close, but still error: RE: Rsamtools filtering bam file: RE: MEDIPS.createSet error
Alignment GO Cancer BSgenome BSgenome Rsamtools genomes MEDIPS Alignment GO Cancer
updated 10.1 years ago by ▴ 570 • written 10.1 years ago by ▴ 220
0
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6
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1.7k
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separate MEDIPS.createSet required for each replicate? RE: using custom BSgenome with MEDIPS
Alignment BSgenome safe BSgenome MEDIPS Alignment BSgenome safe BSgenome MEDIPS
updated 10.3 years ago by ▴ 570 • written 10.3 years ago by ▴ 220
0
votes
1
reply
1.7k
views
MEDIPS quality control
process medips
updated 9.5 years ago by ▴ 570 • written 9.6 years ago by • 0
0
votes
2
replies
1.7k
views
MeQA and MEDIPS
bioconductor meqa medips
updated 6.9 years ago by • 0 • written 7.9 years ago by • 0
1
vote
6
replies
1.7k
views
MEDIPS: Output appears to be truncated
medips
updated 9.1 years ago by ▴ 570 • written 9.1 years ago by • 0
0
votes
1
reply
1.6k
views
Error in MEDIPS.calibrationCurve looking for different methylation profiles
medips R
updated 8.2 years ago by ▴ 570 • written 8.2 years ago by • 0
0
votes
7
replies
1.6k
views
MEDIPS error extending reads
Alignment BSgenome BSgenome MEDIPS Alignment BSgenome BSgenome MEDIPS
updated 11.0 years ago by ▴ 570 • written 11.0 years ago by ▴ 290
0
votes
1
reply
1.6k
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[MEDIPS] mergeFrames: `Error in rbind(output, cbind(chromosomes[i], new_start, new_stop)) `
Coverage Regression edgeR MEDIPS Coverage Regression edgeR MEDIPS
updated 10.3 years ago by ▴ 240 • written 10.3 years ago by ▴ 10
0
votes
2
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1.6k
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mr.edgeR tests in MEDIPS package
Coverage MEDIPS Coverage MEDIPS
updated 9.9 years ago by ▴ 240 • written 9.9 years ago by ▴ 10
0
votes
5
replies
1.6k
views
MEDIPS genome Vs createROIset significance issue
medips r
8.2 years ago peter.mcerlean • 0
3
votes
5
replies
1.6k
views
CNV parameter not working - MEDIPS
medips medip-seq error lukas
updated 6.9 years ago by ▴ 240 • written 6.9 years ago by • 0
0
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2
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1.6k
views
Building custom genome in MeDIPS
BSgenome BSgenome genomes MEDIPS BSgenome BSgenome genomes MEDIPS
updated 11.6 years ago by 65k • written 11.6 years ago by ▴ 10
2
votes
2
replies
1.6k
views
Normalizing Depth Coverage between samples MEDIPS
normalization medips depth edgeR "R"
updated 8.4 years ago by ★ 28k • written 8.4 years ago by • 0
0
votes
6
replies
1.6k
views
MEDIPS - input
MEDIPS input
7.9 years ago • updated 7.8 years ago GFM ▴ 20
1
vote
2
replies
1.5k
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MEDIPS - RPKM
MEDIPS
9.1 years ago malbert1 • 0
0
votes
2
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1.5k
views
Aha: different error may be a clue: RE: separate MEDIPS.createSet required for each replicate? RE: using custom BSgenome with MEDIPS
Alignment BSgenome safe BSgenome MEDIPS Alignment BSgenome safe BSgenome MEDIPS
updated 10.3 years ago by ▴ 570 • written 10.3 years ago by ▴ 220
1
vote
1
reply
1.5k
views
MeDIPS and use of the 'bwa' parameter
R medip-seq medips bwa
updated 7.7 years ago by ▴ 570 • written 7.7 years ago by • 0
1
vote
2
replies
1.4k
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MEDIPS: Export rms values as Wiggle for visualization in UCSC
medips
9.5 years ago malbert1 • 0
4
votes
2
replies
1.4k
views
MEDIPS
MEDIPS MEDIPS
11.2 years ago Paolo Kunderfranco ▴ 350
0
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1
reply
1.4k
views
Error raised during execution of MEDIPS package
medips
updated 7.1 years ago by ▴ 570 • written 7.1 years ago by • 0
0
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2
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1.4k
views
Bioconductor source code - Errno::ECONNREFUSED in Codes#show
medips bioconductor error source code
9.4 years ago malbert1 • 0
0
votes
1
reply
1.4k
views
Question about MEDIPS extend parameter : RE: Success: RE: Seed file error: RE: BioStrings for current R: RE: BSgenomeForge seed file - seqnames field
Annotation GO Cancer BSgenome OrganismDb SNPlocs TranscriptDb Biostrings BSgenome MEDIPS
updated 10.3 years ago by ▴ 240 • written 10.3 years ago by 16k
0
votes
3
replies
1.4k
views
separate MEDIPS.createSet required for each replicate? RE: using custom BSgenome with MEDIPS
BSgenome BSgenome MEDIPS BSgenome BSgenome MEDIPS
updated 10.3 years ago by ▴ 570 • written 10.3 years ago by ▴ 220
2
votes
2
replies
1.4k
views
Non-CpG Methylation in MEDIPS Package
medips
updated 9.1 years ago by ▴ 240 • written 9.1 years ago by • 0
1
vote
6
replies
1.4k
views
Alternative methylation contexts with MEDIPS?
MEDIPS
updated 7.7 years ago by ▴ 240 • written 7.7 years ago by ▴ 90
0
votes
1
reply
1.3k
views
Segfault in MEDIPS MEDIPS.methylProfiling() with ROI file
Preprocessing BSgenome biomaRt BSgenome GenomicRanges MEDIPS Preprocessing BSgenome MEDIPS
updated 11.1 years ago by ▴ 570 • written 11.1 years ago by ▴ 290
0
votes
1
reply
1.3k
views
similar problem installing MEDIPS on Ubuntu 14.04
installation medips
7.5 years ago avilella ▴ 10
0
votes
1
reply
1.3k
views
How to do FDR p.adj manually on "mr.edgeR object" from MEDIPS package?
R Medips edgeR
updated 8.2 years ago by ▴ 570 • written 8.2 years ago by • 0
4
votes
5
replies
1.3k
views
Extracting normalized counts in MEDIPS
MEDIPS MeDIP-seq
updated 2.6 years ago by ▴ 20 • written 4.4 years ago by ▴ 40
0
votes
1
reply
1.3k
views
non-CpG methylated regions and strand information in MEDIPS output
BSgenome annotate biomaRt BSgenome MEDIPS BSgenome annotate biomaRt BSgenome MEDIPS
updated 9.7 years ago by ▴ 570 • written 9.7 years ago by ★ 13k
0
votes
3
replies
1.3k
views
Caught segfault when running MEDIPS package
Sequencing MEDIPS Sequencing MEDIPS
updated 12.3 years ago by ▴ 40 • written 12.3 years ago by ★ 13k
0
votes
2
replies
1.3k
views
New to R: How to use your own data for Bioconductor Packages
MEDIPS rsamtools
updated 8.6 years ago by ★ 8.2k • written 8.6 years ago by • 0
0
votes
2
replies
1.3k
views
MEDIPS: Any way to get more columns/data from MEDIPS.mergeFrames?
MEDIPS mergeFrames
updated 9.0 years ago by ▴ 570 • written 9.0 years ago by • 0
0
votes
3
replies
1.3k
views
MEDIPS - Annotation output explanation
MEDIPS Output
6.0 years ago vjain • 0
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