Bioconductor MNN

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mnn batchelor scrna-seq seurat

updated 3.3 years ago by Aaron Lun ★ 28k • written 3.3 years ago by heir_of_isildur88 • 0

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scRNA-Seq scater scran rna-seq MNN

updated 4.0 years ago by Aaron Lun ★ 28k • written 4.0 years ago by hamza_karakurt ▴ 50

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batchelor mnn scrna-seq

updated 13 months ago by Guandong Shang ▴ 40 • written 3.7 years ago by heir_of_isildur88 • 0

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mnnCorect MNN

4.0 years ago sharvari gujja ▴ 40

4 results • Page 1 of 1

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Comment: For R version 4.0.2 and Biconductor version 3.11, clusterProfiler is not working by ATpoint ★ 3.4k

It's a very old version of Bioconductor. The issue is clear, you need to install europepmc, but you don't show the compilation/install erro…

Comment: Create design matrix for differential methylation analysis by Basti ▴ 720

The design matrix creation is described part 2.7, please do not skip parts in the tutorial

Comment: Deseq2, how to model design for comparing Mutant mouse at age 14 days versus Mu by ruba-mahmoud • 0

thank you for your reply and help, yes actually am aware when to use them and also my experiment is similar to the one stated in here https…

Comment: LIMMA dupcor() function time issue. by Gordon Smyth 48k

That's ok, but there is nothing to be gained by subsetting 1000 times. It would be better to simply subset 100,000 rows once, although the …

Comment: Specifying evidence channels in STRINGdb by robynne.braun • 0

Also I found prior thread here addressing the same question with response that functionality will be supported someday. This was a few year…

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Comment: DataFrame Construction With Non-standard Column

A: Using of limma moderated t-test with "corrected" expression matrix resulting fr

Answer: Deseq2, enrichGO and ensembl ID

A: LIMMA dupcor() function time issue.

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