Bioconductor MSIGDB

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146

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geneset GeneSetEnrichment msigdb

15 days ago • updated 14 days ago Seongsu • 0

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197

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msigdb gmt GSEA

written 29 days ago by Georg • 0

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1.9k

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gseabase msigdb genesetcollection Tutorial

written 5.8 years ago by t.kuilman ▴ 170

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550

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ssgsea GSVA biotype proteincoding msigdb

updated 4 months ago by Robert Castelo ★ 3.2k • written 4 months ago by snijesh ▴ 20

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1.2k

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msigdb GSEABase GSVA

updated 2.1 years ago by Robert Castelo ★ 3.2k • written 2.1 years ago by forlani.luca • 0

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4.0k

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clusterprofiler GSEA MSIGDB

updated 6.1 years ago by Guangchuang Yu ★ 1.2k • written 6.1 years ago by thomasjenner333 • 0

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1.4k

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limma romer msigdb

updated 8.6 years ago by James W. MacDonald 65k • written 8.6 years ago by Jon Manning ▴ 40

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1.3k

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category gostats msigdb hypergeometric test

8.7 years ago petyuk ▴ 70

8 results • Page 1 of 1

Recent ...

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Comment: DEG with low counts by Rajat • 0

Dear Dr. Michael Thanks for you quick reply. I appreciate it. Attached is the plotcounts for one gene. I am experiencing like this in oth…

Comment: Light difference when using coef vs omit a group when compare 3 groups. by Chris • 0

Hi Gordon, thank you so much for your guide! I check my data as you said there is no difference in my data. This is the MDS plot at genes l…

Comment: How to correct for known and surrogate variables in DESeq2? by Michael Love 41k

To question 3: if you model technical variation using only ~group vs ~1, then it will be correlated with known technical variables, which y…

Answer: flowStats Search Error by shepherl 3.8k

We are aware of an issue with bioconductor.org search and are investigating. We apologize for an inconvenience this is causing.

Comment: How to correct for known and surrogate variables in DESeq2? by nhaus ▴ 30

Hey Crystal, did you end up getting advice? I am facing the exact same questions that you are having right now. Would be very grateful if y…

Votes

Answer: Light difference when using coef vs omit a group when compare 3 groups.

C: Add new columns to DESeqResults from text file by matching rownames.

Answer: geneList error in clusterprofiler

Comment: Memory errors using read.bismark?

Comment: Not fully paired differential gene expression analysis

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