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Mac
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reset
3
votes
4
replies
2.8k
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R Error: package ‘GenomeInfoDb’ could not be loaded on MacBook
error
mac
DESeq2
GenomeInfoDb
R
3.3 years ago • updated 3.2 years ago
Dan
▴ 20
0
votes
1
reply
1.2k
views
problem loading gwascat and ggbio
gwascat
ggbio
Mac
7.8 years ago
jameshunterbr
• 0
0
votes
1
reply
1.3k
views
MSGFplus: fail to load on Mac OSX 10.13.6 due to javaVersion error
msgfplus
mac
java
updated 5.8 years ago by
Mike Smith
★ 6.5k • written 5.8 years ago by
dgemoets
• 0
0
votes
3
replies
985
views
Problem installing biomaRt on mac
biomaRt
mac
updated 8 months ago by
15753563659
▴ 50 • written 17 months ago by
alfonsosaera
• 0
0
votes
13
replies
2.6k
views
error message with BiocManager::install on Mac console that's not on mac command line
BiocManager
Mac
updated 4.8 years ago by
Martin Morgan
25k • written 4.8 years ago by
raf4
▴ 20
4
votes
2
replies
1.8k
views
The Mac version of R always reports an error when installing WGCNA
software error
WGCNA
mac
updated 4.0 years ago by
James W. MacDonald
65k • written 4.0 years ago by
562125035
• 0
2
votes
3
replies
1.4k
views
bplapply - only SerialParam or single worker Multicore working on R/macos 10.14
BiocParallel
mac
R
updated 5.1 years ago by
Martin Morgan
25k • written 5.1 years ago by
geo.vogler
▴ 10
0
votes
2
replies
1.1k
views
Usinig BiocParallel package in R with M1 MAC
RStudio
R
M1
BiocParallel
Mac
updated 15 months ago by
Christian Mertes
• 0 • written 17 months ago by
me.achleitner
• 0
0
votes
1
reply
1.6k
views
Problem with installation of rhdf5 on R 3.2.0 Mac Yosemite 10.10.4
rhdf5
r
mac
8.7 years ago
ambageo
• 0
9 results • Page
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Comment: Reproducibility issue with scran together with lapply and BiocParallel
by
ATpoint
★ 4.0k
Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
• 0
Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…
Answer: Reproducibility issue with scran together with lapply and BiocParallel
by
Aaron Lun
★ 28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio
by
Aaliya
• 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Votes
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
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