Bioconductor MakeOrgPackageFromNCBI

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annotation annotationforge annotationdbi makeorgpackagefromncbi

9.2 years ago oliver.tills • 0

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MakeOrgPackageFromNCBI NCBI SQL AnnotationForge

updated 3.9 years ago by James W. MacDonald 65k • written 3.9 years ago by chefer • 0

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makeorgpackagefromncbi

updated 2.9 years ago by Vincent J. Carey, Jr. 6.7k • written 7.8 years ago by cagenet34 ▴ 20

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AnnotationForge makeOrgPackageFromNCBI gene ontology edgeR pathwayanalysis

updated 12 months ago by L ▴ 50 • written 4.1 years ago by babak.loghmani ▴ 20

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makeOrgPackageFromNCBI

updated 13 months ago by James W. MacDonald 65k • written 13 months ago by irene.artuso • 0

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AnnotationForge makeOrgPackageFromNCBI

updated 6 months ago by James W. MacDonald 65k • written 6 months ago by mat149 ▴ 70

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OrganismDbi makeOrgPackageFromNCBI

updated 3 months ago by James W. MacDonald 65k • written 3 months ago by dissikratzl • 0

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annotationforge makeorgpackagefromncbi

6.8 years ago gabciamm • 0

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annotationforge makeOrgPackageFromNCBI

updated 4.2 years ago by James W. MacDonald 65k • written 4.2 years ago by lesneski • 0

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makeorgpackagefromNCBI s.pombe sqliteExecStatement

9.5 years ago Parham • 0

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Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0

Thank you!

Comment: FGSEA pre-ranked input in increasing order or decreasing by alserg ▴ 240

They are reorder in the decreasing order.

Comment: significant difference of p-values with dream() after updating VariancePartition by Le • 0

Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…

Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs by sredemption • 0

Try library(enrichplot) dotplot(gsea_FS, showCategory=10, split=".sign") + facet_grid(.~.sign)

Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0

Thank you for your reply and I know there is another post similar to this you had mentioned this. How are the genes that I mentioned in the…

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How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

Comment: DEXSeq DEXSeqDataSet count matrix duplication

Comment: Error in champ.load(): The following specified files do not exist

Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos

Using GRanges and IRanges to simply get all chromosome data

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