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Meta Analysis
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873
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metaDE R and RRA R
microarray
meta analysis
4.2 years ago
lily
▴ 20
0
votes
1
reply
573
views
Meta_analysis of microarray data
microarray
microarray data
Meta Analysis
platform
updated 5.1 years ago by
James W. MacDonald
65k • written 5.1 years ago by
Jamal
• 0
0
votes
1
reply
1.1k
views
Meta_analysis of different platforms of microarray data
microarray
meta analysis
cancer
Software
R
updated 5.3 years ago by
James W. MacDonald
65k • written 5.3 years ago by
Jamal
• 0
0
votes
0
replies
595
views
how to convert DEGs indices to gene symbols or gene names which i get during meta analysis through MAMA package using pvalcombination function and me…
MAMA
pvalcombination
meta analysis
metaMA
DEGs' indices
6.0 years ago
niteshkumar20sept
• 0
0
votes
1
reply
756
views
meta de r package
meta analysis
6.4 years ago
lily
▴ 20
1
vote
0
replies
1.0k
views
Meta Analysis on CAMERA results
limma
camera
cohen d
meta analysis
7.2 years ago
Andy91
▴ 60
0
votes
1
reply
1.2k
views
meta analysis of clc output(differential expression data )
rnaseq
metaseq
clc output
pvalue
meta analysis
updated 7.3 years ago by
Koki
▴ 10 • written 7.3 years ago by
hassangiahi
• 0
2
votes
3
replies
1.7k
views
combine different GSE on different GPL
annotation
genesymbols
meta analysis
8.0 years ago
wahaha123
• 0
8 results • Page
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Answer: How to make DGEList and design matrix by edgeR package
by
Gordon Smyth
50k
Your question is curious because you showed code that made a DGEList and design matrix in your previous post just 15 hours ago. Please h…
Answer: Finding DEGs by using edgeR
by
Gordon Smyth
50k
I am not clear what you mean that you have already normalized your data. How exactly did you normalize the data? The best way to do an edg…
Answer: Log-cpm values from limma
by
Gordon Smyth
50k
The log-cpm values from voom() are not free of batch effect. If you want batch-corrected log-cpm values, we recommend cpm() followed by rem…
Comment: Differential peaks that were not identified in diffbind were identified in diseq
by
ATpoint
★ 4.0k
As expected normalization is **way** off, meaning in simple terms that the cloud is too high. The deep-blue area should be along y=0. Try t…
Comment: Differential peaks that were not identified in diffbind were identified in diseq
by
lonn
• 0
Thank you for your suggestions! Here is the MA plot: ![enter image description here][1] I tried several normalization methods with DiffBi…
Votes
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
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