Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
Metabolomics
•
reset
0
votes
0
replies
4.0k
views
Bioconductor 2.14 is released
BiocViews
aCGH
SNP
Sequencing
RNASeq
ChIPSeq
miRNA
Microarray
qPCR
Metabolomics
Coverage
10.0 years ago
Dan Tenenbaum
★ 8.2k
3
votes
2
replies
3.2k
views
limma for metabolite data
limma
metabolomics
limma paired analysis
updated 2.4 years ago by
Francisco
• 0 • written 7.0 years ago by
mahes.muniandy
• 0
0
votes
4
replies
2.8k
views
XCMS for targeted metabolomic/lipidomics/proteomics
xcms
metabolomics
lipidomics
statistics
8.3 years ago
Titan
• 0
0
votes
4
replies
2.8k
views
mzR could not be loaded on XCMS
xcms
msdata
mzR
Rcpp
metabolomics
8.3 years ago
Titan
• 0
0
votes
6
replies
2.7k
views
Help Error could not find function xcmsSet
xcms
metabolomics
mzr rcpp
ramp
8.0 years ago
dfrtyu
• 0
2
votes
9
replies
2.6k
views
Unexpected total ion count (TIC) with xcms package
xcms
metabolomics
updated 9.0 years ago by
Thomas Lin Pedersen
▴ 70 • written 9.0 years ago by
Johannes Rainer
★ 2.0k
1
vote
3
replies
2.5k
views
XCMS2 on MSMS data
xcms
metabolomics
massspectrometry
lipidomics
bioconductor
8.3 years ago • updated 8.2 years ago
Titan
• 0
0
votes
0
replies
2.5k
views
Postdoctoral Fellow - Bioinformatics - Singapore, IMCB, Biopolis
Genetics
Metabolomics
Pathways
Cancer
Genetics
Metabolomics
Pathways
Cancer
12.6 years ago
Emilie Bard
▴ 10
0
votes
3
replies
2.4k
views
Difference between methods getEIC and rawEIC for xcmsRaw classes
xcms
metabolomics
9.0 years ago
Johannes Rainer
★ 2.0k
16
votes
12
replies
2.3k
views
VST transformation (DESeq2) for metabolomics data
vst
Metabolomics
DESeq2
24 months ago
Joan Miró
▴ 80
5
votes
7
replies
2.2k
views
XCMS obiwarp adjustRtime issue
xcms
obiwarp
adjustrtime
metabolomics
updated 6.5 years ago by
Johannes Rainer
★ 2.0k • written 6.5 years ago by
bhgyu
▴ 30
3
votes
3
replies
2.2k
views
installing xcms and faahKO package
metabolomics
updated 6.6 years ago by
Laurent Gatto
1.6k • written 6.6 years ago by
Ali.Moazzami
▴ 10
3
votes
1
reply
2.2k
views
Tutorial:
Mass Spectrometry Data Analysis with the Spectra Package
mass spectrometry
proteomics
metabolomics
Tutorial
written 3.5 years ago by
Johannes Rainer
★ 2.0k
1
vote
4
replies
2.2k
views
How to get from xcmsRaw to a xcmsSet
xcms
metabolomics
updated 9.0 years ago by
Thomas Lin Pedersen
▴ 70 • written 9.0 years ago by
Johannes Rainer
★ 2.0k
0
votes
3
replies
2.1k
views
Problem with XCMS
xcms
metabolomics
lipidomics
proteomics
massspectrometry
8.3 years ago
Titan
• 0
0
votes
4
replies
2.0k
views
OPLS-DA: values of pR2Y and pR2Q
Metabolomics
2.1 years ago • updated 22 months ago
Eddie
• 0
0
votes
0
replies
2.0k
views
vacancy postdoc or PhD in the Netherlands
Metabolomics
Network
Organism
Metabolomics
Network
Organism
15.1 years ago
Hendriks, M.
▴ 10
4
votes
7
replies
1.9k
views
Issues uploading database for metabolomic data analysis with Pathway Activity Profiling - PAPi
papi
metabolomics
pathway analysis
updated 7.1 years ago by
k_hulce
▴ 10 • written 8.0 years ago by
hp71727
▴ 10
0
votes
0
replies
1.8k
views
Job:
Data scientist/bioinformatician - Paris
Genomics
metabolomics
biostatistics
data integration
Job
8.5 years ago
David Enot
▴ 30
0
votes
2
replies
1.7k
views
Extracting subclusters from original data
complexheatmap
metabolomics
updated 6.7 years ago by
sina.nassiri
▴ 130 • written 6.7 years ago by
Mina
• 0
0
votes
5
replies
1.6k
views
ROC plot for OPLS-DA
Metabolomics
updated 22 months ago by
etienne.thevenot
▴ 40 • written 2.0 years ago by
Eddie
• 0
0
votes
1
reply
1.6k
views
OPLS package with @subsetVi = numeric(0)
metabolomicsWorkbenchR
PLS
OPLS
Metabolomics
ropls
updated 2.7 years ago by
etienne.thevenot
▴ 40 • written 2.7 years ago by
Fernando
• 0
0
votes
3
replies
1.6k
views
metabolomics data analysis
Metabolomics
Metabolomics
updated 10.6 years ago by
Laurent Gatto
1.6k • written 10.6 years ago by
Guest User
★ 13k
0
votes
1
reply
1.6k
views
metaMS for analysis of GC-MS data
metaMS
xcms
GC-MS
metabolomics
volatile organic compounds
updated 7.9 years ago by
ron.wehrens
▴ 20 • written 7.9 years ago by
lucie.conchou
• 0
1
vote
0
replies
1.5k
views
Normalization of metabolomics/lipidomics data for limma
Lipidomics
Metabolomics
limma
Normalization
2.8 years ago
pgugger
▴ 70
0
votes
0
replies
1.5k
views
John Innes Centre, UK - Statistician Position
Genetics
Metabolomics
Genetics
Metabolomics
20.3 years ago
david lowe JIC
▴ 10
0
votes
1
reply
1.5k
views
Metabolite identification package
xcms
massspectrometry
metabolomics
updated 6.0 years ago by
Johannes Rainer
★ 2.0k • written 6.0 years ago by
johnhamre3
• 0
1
vote
2
replies
1.4k
views
Package won't recognise raw data files
camera
metabolomics
r
6.4 years ago
bhgyu
▴ 30
0
votes
1
reply
1.4k
views
findneutral xcms xcmsSet
R
metabolomics
LC-MS
xcms
readMzXmlData
updated 7.5 years ago by
James W. MacDonald
65k • written 7.5 years ago by
micheleserra
• 0
0
votes
0
replies
1.3k
views
Job:
Postdoctoral researcher in Computational Metabolomics
xcms
metabolomics
population
metabolism
job
Job
updated 5.3 years ago by
Resume101
• 0 • written 5.4 years ago by
Johannes Rainer
★ 2.0k
0
votes
0
replies
1.3k
views
'Cheminformatics in R' workshop at the EBI: 17-18 May 2010
Metabolomics
Cheminformatics
Visualization
xcms
Metabolomics
Cheminformatics
Visualization
14.2 years ago
Gabriella Rustici
▴ 60
0
votes
1
reply
1.3k
views
Permutation test for OPLS-DA
Metabolomics
updated 2.0 years ago by
etienne.thevenot
▴ 40 • written 2.1 years ago by
Eddie
• 0
0
votes
5
replies
1.2k
views
runInfo returns startTimeStamp -infinity
lcms
mzR
metabolomics
xcms
MSnbase
updated 4.6 years ago by
Laurent Gatto
1.6k • written 4.6 years ago by
pol.soladelossantos
• 0
0
votes
0
replies
1.2k
views
PLGEM on metabolomic data?
miRNA
Metabolomics
Proteomics
Normalization
plgem
miRNA
Metabolomics
Proteomics
plgem
11.6 years ago
Norman Pavelka
▴ 140
0
votes
1
reply
1.2k
views
OPLS-DA permutation test
Metabolomics
updated 2.0 years ago by
etienne.thevenot
▴ 40 • written 2.0 years ago by
Eddie
• 0
0
votes
0
replies
1.2k
views
COURSE: Introduction to Metabolomics and biomarker research
Metabolomics
Metabolomics
14.6 years ago
Matthias Kohl
▴ 160
0
votes
0
replies
1.2k
views
Bioconductor 2.4 is released
Microarray
qPCR
Metabolomics
Annotation
Normalization
graph
flowCore
Microarray
qPCR
15.0 years ago
Patrick Aboyoun
★ 1.6k
0
votes
0
replies
1.2k
views
Bioinformatics position, Austria
Metabolomics
Visualization
Metabolomics
Visualization
14.2 years ago
David Enot
▴ 30
0
votes
1
reply
1.2k
views
suggestion for metabolomics packages
metabolomics
9.0 years ago
marco fabbri
▴ 320
0
votes
0
replies
1.1k
views
fillPeaks not calculating "intb" values.
xcms
metabolomics
8.2 years ago
Johannes Rainer
★ 2.0k
1
vote
2
replies
1.1k
views
calculate theoretical isotope distribution give the AA sequence
Metabolomics
proteomics
MassSpectrometry
3.3 years ago
Oliver
• 0
0
votes
1
reply
1.1k
views
MAIT - suppress interactive mode
mait
metabolomics
updated 9.1 years ago by
Dan Tenenbaum
★ 8.2k • written 9.1 years ago by
dilara.ally
• 0
0
votes
0
replies
1.1k
views
Job:
Postdoctoral Position: Posttranscriptional gene regulation in T cells (analysis of RNAseq, metabolomics)
Basel
switzerland
RNAseq
metabolomics
Job
6.0 years ago
Robert Ivanek
▴ 730
0
votes
0
replies
1.1k
views
CAMERA error - isotopeProportionFits
camera
metabolomics
6.3 years ago
bhgyu
▴ 30
0
votes
0
replies
1.0k
views
'names' attribute must be the same length as the vector - PAPi problems
PAPi
metabolomics
pathway analysis
raphael
5.8 years ago
maryke.wijma
• 0
0
votes
1
reply
1.0k
views
MAIT or Specmine
metabolomics
mait
specmine
mass spectrometry
6.5 years ago
bhgyu
▴ 30
0
votes
0
replies
1.0k
views
Job:
Postdoctoral researcher in Computational Metabolomics
metabolomics
xcms
Job
5.1 years ago
Johannes Rainer
★ 2.0k
2
votes
0
replies
911
views
Job:
PostDoc position for the analysis of large scale metabolomics data
metabolomics
proteomics
Job
3.6 years ago
Johannes Rainer
★ 2.0k
0
votes
1
reply
886
views
How to make OPLS-DA variable importance plot
crlmm
ropls
Metabolomics
updated 9 months ago by
James W. MacDonald
65k • written 9 months ago by
Charlotte
• 0
0
votes
0
replies
866
views
tricky batch problem
Metabolomics
Regression
Metabolomics
Regression
17.4 years ago
E. Schwarz
▴ 10
50 results • Page
1 of 1
Recent ...
Replies
Comment: How to retrieve detailed regression results from deseq2
by
Weiqian
▴ 10
Hi Michael, thanks for the answer! I'll have a look : )
Comment: DESeq filtering specific to contrasts
by
Michael Love
41k
It will likely not filter it out, but really the per-dataset details would affect the results.
Comment: DESeq filtering specific to contrasts
by
Carlin95
• 0
Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…
Comment: FilterByExpr low counts with small sample size
by
Jonathan
▴ 10
Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
by
Seyram M.
• 0
Thank you very much for your reply! I will do so. Kind regards, Seyram
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Awards
• All
Popular Question
to
shepherl
3.8k
Popular Question
to
BioinfGuru
▴ 30
Popular Question
to
Gordon Smyth
50k
Scholar
to
Peter Hickey
▴ 740
Popular Question
to
sropri
• 0
Locations
• All
France,
just now
United States,
just now
United States,
7 minutes ago
United States,
36 minutes ago
United States,
40 minutes ago
Traffic: 813 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6